miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22683 5' -53.3 NC_005091.1 + 12484 0.66 0.866209
Target:  5'- gUCGAGC-UUGUCCUCGAUGCGUcGCa -3'
miRNA:   3'- -AGCUCGcAAUGGGGGUUAUGCGcUGc -5'
22683 5' -53.3 NC_005091.1 + 11693 0.66 0.857206
Target:  5'- uUUGGGCGUcUAUCCCCGgcacgaagaacacGUACG-GACa -3'
miRNA:   3'- -AGCUCGCA-AUGGGGGU-------------UAUGCgCUGc -5'
22683 5' -53.3 NC_005091.1 + 7193 0.66 0.849627
Target:  5'- gCGGcGCGUUACCUUCGucuugccgGCaGCGGCGg -3'
miRNA:   3'- aGCU-CGCAAUGGGGGUua------UG-CGCUGC- -5'
22683 5' -53.3 NC_005091.1 + 6814 0.66 0.849627
Target:  5'- cCGGGC--UGCUUCUuGUugGCGACGg -3'
miRNA:   3'- aGCUCGcaAUGGGGGuUAugCGCUGC- -5'
22683 5' -53.3 NC_005091.1 + 26240 0.66 0.832133
Target:  5'- cUGAGCGgcAgCCCgAAUACGagcgaGGCGa -3'
miRNA:   3'- aGCUCGCaaUgGGGgUUAUGCg----CUGC- -5'
22683 5' -53.3 NC_005091.1 + 8579 0.67 0.813798
Target:  5'- cUCGAacGCG-UGCgCCCAauacucaacuccGUGCGCGGCu -3'
miRNA:   3'- -AGCU--CGCaAUGgGGGU------------UAUGCGCUGc -5'
22683 5' -53.3 NC_005091.1 + 52262 0.68 0.764809
Target:  5'- gCGAGCGUgaucauggcaaGCCCCUuaguGUGCGUuGCGg -3'
miRNA:   3'- aGCUCGCAa----------UGGGGGu---UAUGCGcUGC- -5'
22683 5' -53.3 NC_005091.1 + 55118 0.68 0.744182
Target:  5'- aCGGGCGagGCCCCCAaaGUAaGC-ACGa -3'
miRNA:   3'- aGCUCGCaaUGGGGGU--UAUgCGcUGC- -5'
22683 5' -53.3 NC_005091.1 + 49207 0.68 0.7231
Target:  5'- aCGuGCGgcuucuCCCCCGucagcACGCGAUGg -3'
miRNA:   3'- aGCuCGCaau---GGGGGUua---UGCGCUGC- -5'
22683 5' -53.3 NC_005091.1 + 52031 0.68 0.7231
Target:  5'- gCGAGCGUgacuUCCUCAAU-CGCGAg- -3'
miRNA:   3'- aGCUCGCAau--GGGGGUUAuGCGCUgc -5'
22683 5' -53.3 NC_005091.1 + 49628 0.69 0.712418
Target:  5'- aCGAGCGaUGCCaauCCGAUcgAUGCGGCc -3'
miRNA:   3'- aGCUCGCaAUGGg--GGUUA--UGCGCUGc -5'
22683 5' -53.3 NC_005091.1 + 50860 0.69 0.667917
Target:  5'- cCGAGCGUUGCCaagcuggCCCGcgAacUGCGGCu -3'
miRNA:   3'- aGCUCGCAAUGG-------GGGUuaU--GCGCUGc -5'
22683 5' -53.3 NC_005091.1 + 51524 0.69 0.658046
Target:  5'- gCGAGcCGUagaaccGCCCCCGcgcaguaucugAUACGCGGCc -3'
miRNA:   3'- aGCUC-GCAa-----UGGGGGU-----------UAUGCGCUGc -5'
22683 5' -53.3 NC_005091.1 + 43554 0.7 0.614047
Target:  5'- gUCGAGCaGUaaggaAgUCCUGAUGCGCGGCGa -3'
miRNA:   3'- -AGCUCG-CAa----UgGGGGUUAUGCGCUGC- -5'
22683 5' -53.3 NC_005091.1 + 695 0.72 0.537975
Target:  5'- aUGAGCGgcagaugGCCCCaCAucucuuucGCGCGACGg -3'
miRNA:   3'- aGCUCGCaa-----UGGGG-GUua------UGCGCUGC- -5'
22683 5' -53.3 NC_005091.1 + 58089 0.72 0.537975
Target:  5'- aUGAGCGgcagaugGCCCCaCAucucuuucGCGCGACGg -3'
miRNA:   3'- aGCUCGCaa-----UGGGG-GUua------UGCGCUGC- -5'
22683 5' -53.3 NC_005091.1 + 31785 0.72 0.527338
Target:  5'- aCGAGCag-GCCgCCGAcgaGCGCGACGa -3'
miRNA:   3'- aGCUCGcaaUGGgGGUUa--UGCGCUGC- -5'
22683 5' -53.3 NC_005091.1 + 21390 0.72 0.49593
Target:  5'- aCGGGCG--GCCUCgcGUACGCGGCGg -3'
miRNA:   3'- aGCUCGCaaUGGGGguUAUGCGCUGC- -5'
22683 5' -53.3 NC_005091.1 + 42926 0.75 0.360185
Target:  5'- gCGGGCGUccUACCCCCAucugGCgaagcccuacaaggGCGACGa -3'
miRNA:   3'- aGCUCGCA--AUGGGGGUua--UG--------------CGCUGC- -5'
22683 5' -53.3 NC_005091.1 + 21946 0.97 0.013505
Target:  5'- gUCGAGCGUUA-CCCCAAUACGCGACGa -3'
miRNA:   3'- -AGCUCGCAAUgGGGGUUAUGCGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.