miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22684 3' -51.2 NC_005091.1 + 14265 0.66 0.913626
Target:  5'- uGUC--GUCGGCgagCGGCCaguACCUCc -3'
miRNA:   3'- -CAGuaUAGCCGauaGUCGGcu-UGGAG- -5'
22684 3' -51.2 NC_005091.1 + 53416 0.66 0.913626
Target:  5'- ------cCGGCUcgUAGCCGAGCgUUg -3'
miRNA:   3'- caguauaGCCGAuaGUCGGCUUGgAG- -5'
22684 3' -51.2 NC_005091.1 + 30477 0.66 0.912969
Target:  5'- cGUCAUGcggaaggaagcguUCGGCUG--GGCCgGGACCaUCa -3'
miRNA:   3'- -CAGUAU-------------AGCCGAUagUCGG-CUUGG-AG- -5'
22684 3' -51.2 NC_005091.1 + 17853 0.66 0.899933
Target:  5'- -aCGU-UCcGCUAUCGGCCgGGACCUg -3'
miRNA:   3'- caGUAuAGcCGAUAGUCGG-CUUGGAg -5'
22684 3' -51.2 NC_005091.1 + 2702 0.66 0.892653
Target:  5'- -gCGUGUugCGGCUGUC-GCUGAcaGCUUCg -3'
miRNA:   3'- caGUAUA--GCCGAUAGuCGGCU--UGGAG- -5'
22684 3' -51.2 NC_005091.1 + 32175 0.66 0.877249
Target:  5'- cUCGUAUCGGCcggAUCGGaaGuAACUUCc -3'
miRNA:   3'- cAGUAUAGCCGa--UAGUCggC-UUGGAG- -5'
22684 3' -51.2 NC_005091.1 + 11584 0.67 0.869137
Target:  5'- aUCAUcgCGGCUAUCggGGCugcuaucguagCGAuCCUCg -3'
miRNA:   3'- cAGUAuaGCCGAUAG--UCG-----------GCUuGGAG- -5'
22684 3' -51.2 NC_005091.1 + 53344 0.67 0.860761
Target:  5'- -----cUCGGCUAcgAGCCGGGCCa- -3'
miRNA:   3'- caguauAGCCGAUagUCGGCUUGGag -5'
22684 3' -51.2 NC_005091.1 + 1691 0.68 0.824788
Target:  5'- ----cAUCGGCUAUCGGCCuGAaggagcGCgUCa -3'
miRNA:   3'- caguaUAGCCGAUAGUCGG-CU------UGgAG- -5'
22684 3' -51.2 NC_005091.1 + 31294 0.68 0.805457
Target:  5'- cGUCGUGcCGGCgagCAGCCGAucaUCg -3'
miRNA:   3'- -CAGUAUaGCCGauaGUCGGCUuggAG- -5'
22684 3' -51.2 NC_005091.1 + 28055 0.68 0.805457
Target:  5'- uUCGUGUCGGUgaUGUCGGCUGcauCCg- -3'
miRNA:   3'- cAGUAUAGCCG--AUAGUCGGCuu-GGag -5'
22684 3' -51.2 NC_005091.1 + 34022 0.68 0.805457
Target:  5'- -cCAUGUCGGCauUCGGC-GAACCg- -3'
miRNA:   3'- caGUAUAGCCGauAGUCGgCUUGGag -5'
22684 3' -51.2 NC_005091.1 + 34791 0.69 0.764556
Target:  5'- ----gGUCGGCUAUCAGCgCGAcaGCaUCg -3'
miRNA:   3'- caguaUAGCCGAUAGUCG-GCU--UGgAG- -5'
22684 3' -51.2 NC_005091.1 + 51703 0.69 0.753935
Target:  5'- uUCAU-UCGGCaUAUCAuGCCGAAUCg- -3'
miRNA:   3'- cAGUAuAGCCG-AUAGU-CGGCUUGGag -5'
22684 3' -51.2 NC_005091.1 + 4166 0.7 0.721323
Target:  5'- cGUCAgGUCGGCUGggagauGGCCGAGCg-- -3'
miRNA:   3'- -CAGUaUAGCCGAUag----UCGGCUUGgag -5'
22684 3' -51.2 NC_005091.1 + 11542 0.7 0.67657
Target:  5'- -gCAU-UCGGCUA-CAGCCGGAUCgUCa -3'
miRNA:   3'- caGUAuAGCCGAUaGUCGGCUUGG-AG- -5'
22684 3' -51.2 NC_005091.1 + 14672 0.71 0.653874
Target:  5'- cGUCGUAUCGGCcg--GGCCGAcaACCg- -3'
miRNA:   3'- -CAGUAUAGCCGauagUCGGCU--UGGag -5'
22684 3' -51.2 NC_005091.1 + 7248 0.71 0.653874
Target:  5'- cUCGUGUCGGCgcggGUCucuuuuccuuGGCCGGGgcguCCUCg -3'
miRNA:   3'- cAGUAUAGCCGa---UAG----------UCGGCUU----GGAG- -5'
22684 3' -51.2 NC_005091.1 + 55438 0.71 0.63109
Target:  5'- -gCGUcgCGGCcgccGUCAGCCGGGCgUCc -3'
miRNA:   3'- caGUAuaGCCGa---UAGUCGGCUUGgAG- -5'
22684 3' -51.2 NC_005091.1 + 50295 0.71 0.619695
Target:  5'- -cCAUcGUCGGCUcgCGGCCGAucACC-Cg -3'
miRNA:   3'- caGUA-UAGCCGAuaGUCGGCU--UGGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.