miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22684 5' -49 NC_005091.1 + 30110 0.66 0.973892
Target:  5'- -cGAAGUcgCCGACCAUGGcuuacAGGCc -3'
miRNA:   3'- uaCUUCA--GGCUGGUGCCuuuu-UCUGc -5'
22684 5' -49 NC_005091.1 + 57781 0.66 0.967458
Target:  5'- cGUGAAGg-CGGCCaagcgGCGGGGAGAGcGCGc -3'
miRNA:   3'- -UACUUCagGCUGG-----UGCCUUUUUC-UGC- -5'
22684 5' -49 NC_005091.1 + 54401 0.66 0.967458
Target:  5'- -----cUCCGACCAaGGGAAcAGACGu -3'
miRNA:   3'- uacuucAGGCUGGUgCCUUUuUCUGC- -5'
22684 5' -49 NC_005091.1 + 7736 0.66 0.967458
Target:  5'- aAUGGAGaugucCCGGCCGucgaugacCGGGAGAAGcACGa -3'
miRNA:   3'- -UACUUCa----GGCUGGU--------GCCUUUUUC-UGC- -5'
22684 5' -49 NC_005091.1 + 387 0.66 0.967458
Target:  5'- cGUGAAGg-CGGCCaagcgGCGGGGAGAGcGCGc -3'
miRNA:   3'- -UACUUCagGCUGG-----UGCCUUUUUC-UGC- -5'
22684 5' -49 NC_005091.1 + 1842 0.66 0.963851
Target:  5'- cGUGAAGaa-GACCGgGGAGuucAAGGGCGa -3'
miRNA:   3'- -UACUUCaggCUGGUgCCUU---UUUCUGC- -5'
22684 5' -49 NC_005091.1 + 9380 0.66 0.963851
Target:  5'- -cGGAGgCCGuugaCACGGAGAAGGAg- -3'
miRNA:   3'- uaCUUCaGGCug--GUGCCUUUUUCUgc -5'
22684 5' -49 NC_005091.1 + 2470 0.66 0.959974
Target:  5'- -aGgcGUUCGGCUACGGGAAgcucgGAGuGCGg -3'
miRNA:   3'- uaCuuCAGGCUGGUGCCUUU-----UUC-UGC- -5'
22684 5' -49 NC_005091.1 + 33720 0.67 0.95582
Target:  5'- gGUGAAGUCCcgauGCCGcCGGGcc-AGACGc -3'
miRNA:   3'- -UACUUCAGGc---UGGU-GCCUuuuUCUGC- -5'
22684 5' -49 NC_005091.1 + 41290 0.67 0.95582
Target:  5'- -cGAacAGUCCGcagcagcucaaACCAUGGguGAAGGCa -3'
miRNA:   3'- uaCU--UCAGGC-----------UGGUGCCuuUUUCUGc -5'
22684 5' -49 NC_005091.1 + 41011 0.67 0.946654
Target:  5'- -cGGAGacgCCGGCCGgGGccgacgAGGGAGACGa -3'
miRNA:   3'- uaCUUCa--GGCUGGUgCC------UUUUUCUGC- -5'
22684 5' -49 NC_005091.1 + 44849 0.68 0.91857
Target:  5'- -cGAAGgcaaCGACCACGGcggccggcAAGGGCGg -3'
miRNA:   3'- uaCUUCag--GCUGGUGCCuu------UUUCUGC- -5'
22684 5' -49 NC_005091.1 + 54525 0.7 0.831373
Target:  5'- aAUGGAacacGUCCGA-CACGGAAGgcGGCGa -3'
miRNA:   3'- -UACUU----CAGGCUgGUGCCUUUuuCUGC- -5'
22684 5' -49 NC_005091.1 + 13710 0.71 0.821905
Target:  5'- cGUGAcGUUuuucaacgUGACCACGGAAGAcgcAGGCGa -3'
miRNA:   3'- -UACUuCAG--------GCUGGUGCCUUUU---UCUGC- -5'
22684 5' -49 NC_005091.1 + 42011 0.74 0.649332
Target:  5'- -aGAAGcagacgagauUCCGACCACGGAucguAGGCa -3'
miRNA:   3'- uaCUUC----------AGGCUGGUGCCUuuu-UCUGc -5'
22684 5' -49 NC_005091.1 + 45344 0.77 0.492047
Target:  5'- -cGAAGUgCCGACCGCaGGAGAguaacGAGAUGg -3'
miRNA:   3'- uaCUUCA-GGCUGGUG-CCUUU-----UUCUGC- -5'
22684 5' -49 NC_005091.1 + 22597 1.08 0.00539
Target:  5'- aAUGAAGUCCGACCACGGAAAAAGACGa -3'
miRNA:   3'- -UACUUCAGGCUGGUGCCUUUUUCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.