miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22686 3' -59.1 NC_005091.1 + 21598 0.66 0.556072
Target:  5'- aGCCGAgGCGa--CGCGGCAgaGCaCGCu -3'
miRNA:   3'- gCGGCUgCGUgacGCGCUGUa-CG-GCG- -5'
22686 3' -59.1 NC_005091.1 + 49814 0.66 0.556072
Target:  5'- aCGaCUcACGCACgGC-CGACGUGCCccGCa -3'
miRNA:   3'- -GC-GGcUGCGUGaCGcGCUGUACGG--CG- -5'
22686 3' -59.1 NC_005091.1 + 41959 0.66 0.556072
Target:  5'- uGCCGACGUGCgGCcuCGACAUuuacucGgCGCa -3'
miRNA:   3'- gCGGCUGCGUGaCGc-GCUGUA------CgGCG- -5'
22686 3' -59.1 NC_005091.1 + 23501 0.66 0.556072
Target:  5'- uGgCGACGCGC-GCgGCGAUGgcGCUGCu -3'
miRNA:   3'- gCgGCUGCGUGaCG-CGCUGUa-CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 34727 0.66 0.556072
Target:  5'- aGCCGAcCGCGCcGUuCGugAaGCCGUc -3'
miRNA:   3'- gCGGCU-GCGUGaCGcGCugUaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 22152 0.66 0.556072
Target:  5'- gCGCCcGCGCAgUGCGUacaGCAauCCGCg -3'
miRNA:   3'- -GCGGcUGCGUgACGCGc--UGUacGGCG- -5'
22686 3' -59.1 NC_005091.1 + 16308 0.66 0.552945
Target:  5'- uGCCGGCgGC-CUcgucccugauccggGCGCGACGgcgGgCGCg -3'
miRNA:   3'- gCGGCUG-CGuGA--------------CGCGCUGUa--CgGCG- -5'
22686 3' -59.1 NC_005091.1 + 44448 0.66 0.545672
Target:  5'- uGCCGGUGCACc-CGCca-GUGCCGCu -3'
miRNA:   3'- gCGGCUGCGUGacGCGcugUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 6163 0.66 0.545672
Target:  5'- aGCCGAa--GCgGCGCGACAgucgGaCGCg -3'
miRNA:   3'- gCGGCUgcgUGaCGCGCUGUa---CgGCG- -5'
22686 3' -59.1 NC_005091.1 + 50126 0.66 0.545672
Target:  5'- gCGCCGacuacagggGCGCACUG-Ga-ACcgGCCGCc -3'
miRNA:   3'- -GCGGC---------UGCGUGACgCgcUGuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 54325 0.66 0.545672
Target:  5'- gGUCGA-GCGCUuCGCG-CAUGUCGUc -3'
miRNA:   3'- gCGGCUgCGUGAcGCGCuGUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 3328 0.66 0.544635
Target:  5'- uGUCGAagGCACgguugcuuccgGCGUgucccuuuucgaaGGCAUGCCGCu -3'
miRNA:   3'- gCGGCUg-CGUGa----------CGCG-------------CUGUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 8854 0.66 0.54153
Target:  5'- uGuuGGCGCuGCUGCGCuGGCGaugaacgucguacGCCGUg -3'
miRNA:   3'- gCggCUGCG-UGACGCG-CUGUa------------CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 36575 0.66 0.535336
Target:  5'- gGCCGAgaauccccuUGCAUggggGCGCuuCGUGCgGCg -3'
miRNA:   3'- gCGGCU---------GCGUGa---CGCGcuGUACGgCG- -5'
22686 3' -59.1 NC_005091.1 + 55998 0.66 0.535336
Target:  5'- uGCCGAaGUAaucaUGCGCG-CcgGCCGa -3'
miRNA:   3'- gCGGCUgCGUg---ACGCGCuGuaCGGCg -5'
22686 3' -59.1 NC_005091.1 + 35213 0.66 0.535336
Target:  5'- --nCGACGCguaccacaaGCUGC-UGACcgGCCGCu -3'
miRNA:   3'- gcgGCUGCG---------UGACGcGCUGuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 57893 0.66 0.529167
Target:  5'- gCGCCGuCGCG-UGCGUGAgaaccgcgcgcucucCccGCCGCu -3'
miRNA:   3'- -GCGGCuGCGUgACGCGCU---------------GuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 499 0.66 0.529167
Target:  5'- gCGCCGuCGCG-UGCGUGAgaaccgcgcgcucucCccGCCGCu -3'
miRNA:   3'- -GCGGCuGCGUgACGCGCU---------------GuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 22747 0.66 0.525069
Target:  5'- cCGCCGGC-CGuCaGCGCGGCGUucaGgCGCg -3'
miRNA:   3'- -GCGGCUGcGU-GaCGCGCUGUA---CgGCG- -5'
22686 3' -59.1 NC_005091.1 + 9532 0.66 0.525069
Target:  5'- cCGCCGucgugccCGCACc-CGUGACGaggcUGCCGUg -3'
miRNA:   3'- -GCGGCu------GCGUGacGCGCUGU----ACGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.