miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22686 3' -59.1 NC_005091.1 + 35158 0.67 0.484812
Target:  5'- gCGCCGcCGCgagguACUGC-CGGCAgGuuGCa -3'
miRNA:   3'- -GCGGCuGCG-----UGACGcGCUGUaCggCG- -5'
22686 3' -59.1 NC_005091.1 + 40964 0.67 0.484812
Target:  5'- cCGCCca-GCGCUGCGUG-CGcUGCgCGCc -3'
miRNA:   3'- -GCGGcugCGUGACGCGCuGU-ACG-GCG- -5'
22686 3' -59.1 NC_005091.1 + 33107 0.67 0.488773
Target:  5'- gGCCGcgcucugaaagccauACGC-CUGUGCGAguUGCgUGCg -3'
miRNA:   3'- gCGGC---------------UGCGuGACGCGCUguACG-GCG- -5'
22686 3' -59.1 NC_005091.1 + 44031 0.67 0.49275
Target:  5'- uCGCCGggaagcgacuGCGCccauucgacagACUGCGCGACGUacuccaucaucuCCGCg -3'
miRNA:   3'- -GCGGC----------UGCG-----------UGACGCGCUGUAc-----------GGCG- -5'
22686 3' -59.1 NC_005091.1 + 2300 0.67 0.494744
Target:  5'- aGCCacGACGCAUcGCGaCGACGccgaagGUCGCc -3'
miRNA:   3'- gCGG--CUGCGUGaCGC-GCUGUa-----CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 1007 0.67 0.459451
Target:  5'- aCGCgGGCGCGCUGCuCGGCGUcaauacgacggaaCGCg -3'
miRNA:   3'- -GCGgCUGCGUGACGcGCUGUAcg-----------GCG- -5'
22686 3' -59.1 NC_005091.1 + 1990 0.67 0.455611
Target:  5'- aCGCacaCGACGCugU-CGCGGcCAUGCUGg -3'
miRNA:   3'- -GCG---GCUGCGugAcGCGCU-GUACGGCg -5'
22686 3' -59.1 NC_005091.1 + 15905 0.67 0.504768
Target:  5'- uCGCuCGGCGCGuc-CGCGAUAccgGCCGUa -3'
miRNA:   3'- -GCG-GCUGCGUgacGCGCUGUa--CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 13504 0.67 0.504768
Target:  5'- cCGCCGAgaccguucaCGuCGCUGCuCGACGccggGUCGCu -3'
miRNA:   3'- -GCGGCU---------GC-GUGACGcGCUGUa---CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 3471 0.67 0.507792
Target:  5'- uCGCCGACccacuucaacugauuGCAgaGCgacacgaGCGGCAUGCCu- -3'
miRNA:   3'- -GCGGCUG---------------CGUgaCG-------CGCUGUACGGcg -5'
22686 3' -59.1 NC_005091.1 + 32116 0.67 0.504768
Target:  5'- uGCUcGCGuCGCUcGCcaagGCGACggGCCGCa -3'
miRNA:   3'- gCGGcUGC-GUGA-CG----CGCUGuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 21734 0.67 0.494744
Target:  5'- --gCGGCGCAUgGgGCGACGUucgaacgaacgGCCGCc -3'
miRNA:   3'- gcgGCUGCGUGaCgCGCUGUA-----------CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 41741 0.67 0.493747
Target:  5'- aCGCCGuauaaaaacuggcGCuGCACgaugGCGCGugcguACAUGCUGUc -3'
miRNA:   3'- -GCGGC-------------UG-CGUGa---CGCGC-----UGUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 18030 0.67 0.484812
Target:  5'- cCGCCGAacCGCACacccGuCGCG-CcgGCCGUc -3'
miRNA:   3'- -GCGGCU--GCGUGa---C-GCGCuGuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 54936 0.67 0.455611
Target:  5'- cCGCCGcaACGCGCUcgccaagcgccGCGCGGCugucCCGUu -3'
miRNA:   3'- -GCGGC--UGCGUGA-----------CGCGCUGuac-GGCG- -5'
22686 3' -59.1 NC_005091.1 + 53660 0.67 0.454654
Target:  5'- uCGCCGcacggguACGCGUUGCGCucGGCAaUGCuCGCa -3'
miRNA:   3'- -GCGGC-------UGCGUGACGCG--CUGU-ACG-GCG- -5'
22686 3' -59.1 NC_005091.1 + 34690 0.67 0.455611
Target:  5'- aGCCG--GUACUGCGCGcccACGaugcUGUCGCg -3'
miRNA:   3'- gCGGCugCGUGACGCGC---UGU----ACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 24792 0.67 0.455611
Target:  5'- gGCCGAggaauuccgcCGUGCUGCGCag---GCCGCc -3'
miRNA:   3'- gCGGCU----------GCGUGACGCGcuguaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 30141 0.67 0.455611
Target:  5'- gGCCGACGCuuucGCGCGGgGcuucGCCGg -3'
miRNA:   3'- gCGGCUGCGuga-CGCGCUgUa---CGGCg -5'
22686 3' -59.1 NC_005091.1 + 16214 0.67 0.494744
Target:  5'- cCGCCGuCGCGCccgGaucaGgGACGagGCCGCc -3'
miRNA:   3'- -GCGGCuGCGUGa--Cg---CgCUGUa-CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.