miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22686 3' -59.1 NC_005091.1 + 23265 1.1 0.000415
Target:  5'- uCGCCGACGCACUGCGCGACAUGCCGCc -3'
miRNA:   3'- -GCGGCUGCGUGACGCGCUGUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 28709 0.82 0.052126
Target:  5'- aCGCCGGgGC-CUGCGCG-CAUGCCaGCa -3'
miRNA:   3'- -GCGGCUgCGuGACGCGCuGUACGG-CG- -5'
22686 3' -59.1 NC_005091.1 + 26025 0.79 0.081528
Target:  5'- aCGCCGACGUACgccguggcgaGCGCGAuCAgcucGCCGCg -3'
miRNA:   3'- -GCGGCUGCGUGa---------CGCGCU-GUa---CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 34846 0.78 0.093604
Target:  5'- uCGCCGACGCGCgcgGcCGgGACAUGgCCGa -3'
miRNA:   3'- -GCGGCUGCGUGa--C-GCgCUGUAC-GGCg -5'
22686 3' -59.1 NC_005091.1 + 33220 0.78 0.098894
Target:  5'- gGCCGGCGUAaUGCGCGGCGaccaucUGcCCGCg -3'
miRNA:   3'- gCGGCUGCGUgACGCGCUGU------AC-GGCG- -5'
22686 3' -59.1 NC_005091.1 + 49701 0.78 0.101366
Target:  5'- gGUCGACGCAUUGCGCGuagcucuGCAUGCgGg -3'
miRNA:   3'- gCGGCUGCGUGACGCGC-------UGUACGgCg -5'
22686 3' -59.1 NC_005091.1 + 48808 0.77 0.116506
Target:  5'- aGCUgugaGACGCGCUGCGCcguacggccgauGACAUGCgGCc -3'
miRNA:   3'- gCGG----CUGCGUGACGCG------------CUGUACGgCG- -5'
22686 3' -59.1 NC_005091.1 + 52773 0.76 0.119713
Target:  5'- aGCCGuCGCACUgGC-CGGCGUGCgCGCc -3'
miRNA:   3'- gCGGCuGCGUGA-CGcGCUGUACG-GCG- -5'
22686 3' -59.1 NC_005091.1 + 22231 0.75 0.155331
Target:  5'- uGCUGuACGCACUGCGCGggcGCGucacgccuuuuggcUGCCGUc -3'
miRNA:   3'- gCGGC-UGCGUGACGCGC---UGU--------------ACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 31710 0.75 0.160778
Target:  5'- gCGCCGGcCGCcuucgGCUGCGcCGAaAUGCCGUa -3'
miRNA:   3'- -GCGGCU-GCG-----UGACGC-GCUgUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 57500 0.74 0.169494
Target:  5'- aCGcCCGAcuCGCGCaUGCGCuGCAUGaCCGCg -3'
miRNA:   3'- -GC-GGCU--GCGUG-ACGCGcUGUAC-GGCG- -5'
22686 3' -59.1 NC_005091.1 + 107 0.74 0.169494
Target:  5'- aCGcCCGAcuCGCGCaUGCGCuGCAUGaCCGCg -3'
miRNA:   3'- -GC-GGCU--GCGUG-ACGCGcUGUAC-GGCG- -5'
22686 3' -59.1 NC_005091.1 + 54100 0.74 0.174009
Target:  5'- gCGCCGuCGCGCUGgaaaaGCGagacGCcgGCCGCu -3'
miRNA:   3'- -GCGGCuGCGUGACg----CGC----UGuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 18780 0.74 0.178631
Target:  5'- -cCCGGCGCACaucaucuaugaaUGCGCGACGaaCCGCg -3'
miRNA:   3'- gcGGCUGCGUG------------ACGCGCUGUacGGCG- -5'
22686 3' -59.1 NC_005091.1 + 29874 0.74 0.178631
Target:  5'- aGCCGuCGCGCUGCaaUGugAUGCCGa -3'
miRNA:   3'- gCGGCuGCGUGACGc-GCugUACGGCg -5'
22686 3' -59.1 NC_005091.1 + 799 0.74 0.178631
Target:  5'- uGCCGAucucgUGCGCUGCGC----UGCCGCg -3'
miRNA:   3'- gCGGCU-----GCGUGACGCGcuguACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 11474 0.73 0.193155
Target:  5'- gGCCGAaGCGCaGCGUGACGcgGCCGa -3'
miRNA:   3'- gCGGCUgCGUGaCGCGCUGUa-CGGCg -5'
22686 3' -59.1 NC_005091.1 + 10890 0.73 0.198222
Target:  5'- uGCCGAgUGCAaUGCGCGcCuugGCCGCg -3'
miRNA:   3'- gCGGCU-GCGUgACGCGCuGua-CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 26390 0.73 0.203404
Target:  5'- gGCauucaGGCGguCUGCuGCGGCA-GCCGCa -3'
miRNA:   3'- gCGg----CUGCguGACG-CGCUGUaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 53141 0.73 0.208704
Target:  5'- -aCCGGCGCGCUGUcucGCGugAUuCCGCu -3'
miRNA:   3'- gcGGCUGCGUGACG---CGCugUAcGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.