miRNA display CGI


Results 41 - 60 of 158 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22686 3' -59.1 NC_005091.1 + 22845 0.7 0.325657
Target:  5'- uGCCGAgCGCAC-GCGCcuGAac-GCCGCg -3'
miRNA:   3'- gCGGCU-GCGUGaCGCG--CUguaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 9511 0.7 0.325657
Target:  5'- gGUCGugGCACaucGCGaggcCGGCA-GCCGCg -3'
miRNA:   3'- gCGGCugCGUGa--CGC----GCUGUaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 31173 0.7 0.33263
Target:  5'- aCGaCCGcuuggaaGCGCucCUGCaaCGACAUGCCGCc -3'
miRNA:   3'- -GC-GGC-------UGCGu-GACGc-GCUGUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 46260 0.7 0.333411
Target:  5'- gGCCGuCGUACUGgugaaacaGCGcCAUGCCGa -3'
miRNA:   3'- gCGGCuGCGUGACg-------CGCuGUACGGCg -5'
22686 3' -59.1 NC_005091.1 + 5914 0.7 0.333411
Target:  5'- aCGCCG-CGCACcGCuuCGAgcCGUGCUGCg -3'
miRNA:   3'- -GCGGCuGCGUGaCGc-GCU--GUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 28266 0.7 0.333411
Target:  5'- cCGgCGACGCGCuggcggcuUGCGUGACcuucgccuUGCUGCc -3'
miRNA:   3'- -GCgGCUGCGUG--------ACGCGCUGu-------ACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 24348 0.7 0.341299
Target:  5'- cCGCCGAUcuucugGUACUuCGCGAuCGUGUCGUa -3'
miRNA:   3'- -GCGGCUG------CGUGAcGCGCU-GUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 35661 0.7 0.341299
Target:  5'- aGCCGACuCGCgUGCGCGG-AUGCCccgGCu -3'
miRNA:   3'- gCGGCUGcGUG-ACGCGCUgUACGG---CG- -5'
22686 3' -59.1 NC_005091.1 + 57856 0.7 0.341299
Target:  5'- gGUCGaucaGCGCGCaG-GCGACAaGCCGCg -3'
miRNA:   3'- gCGGC----UGCGUGaCgCGCUGUaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 56897 0.7 0.344492
Target:  5'- uGCCGuCGCugGCUGCGCGguGCAgccacgccaucgcguUGcCCGCg -3'
miRNA:   3'- gCGGCuGCG--UGACGCGC--UGU---------------AC-GGCG- -5'
22686 3' -59.1 NC_005091.1 + 49358 0.69 0.349321
Target:  5'- aCGcCCGACGaACUGCGCcuCGUGUgGCu -3'
miRNA:   3'- -GC-GGCUGCgUGACGCGcuGUACGgCG- -5'
22686 3' -59.1 NC_005091.1 + 34312 0.69 0.356656
Target:  5'- uCGCCGggguGCGCGacCUGaauccaguagcccUGCGGCcgGCCGCg -3'
miRNA:   3'- -GCGGC----UGCGU--GAC-------------GCGCUGuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 45228 0.69 0.357477
Target:  5'- aCGCuCGGCGCuCUGuCGUcuACcgGCCGCg -3'
miRNA:   3'- -GCG-GCUGCGuGAC-GCGc-UGuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 14497 0.69 0.357477
Target:  5'- uGCUGaACGuCGgUGCGCcgguaaGCGUGCCGCu -3'
miRNA:   3'- gCGGC-UGC-GUgACGCGc-----UGUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 11956 0.69 0.357477
Target:  5'- aGCCGuCGUcCUGCGUGACggugacGUGCuCGUg -3'
miRNA:   3'- gCGGCuGCGuGACGCGCUG------UACG-GCG- -5'
22686 3' -59.1 NC_005091.1 + 57933 0.69 0.365766
Target:  5'- uCGCCuGCGCGCUGauCGACcgccgauUGCUGCu -3'
miRNA:   3'- -GCGGcUGCGUGACgcGCUGu------ACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 539 0.69 0.365766
Target:  5'- uCGCCuGCGCGCUGauCGACcgccgauUGCUGCu -3'
miRNA:   3'- -GCGGcUGCGUGACgcGCUGu------ACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 52033 0.69 0.374186
Target:  5'- gGCCGuaGCGCACUcggcuacucGCGUcacGGCGUGuuGCu -3'
miRNA:   3'- gCGGC--UGCGUGA---------CGCG---CUGUACggCG- -5'
22686 3' -59.1 NC_005091.1 + 56949 0.69 0.374186
Target:  5'- --gCGACGCAgaGCG-GGCcgGCCGUg -3'
miRNA:   3'- gcgGCUGCGUgaCGCgCUGuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 20265 0.69 0.382736
Target:  5'- gGCCGACGCgucgccgcuuuGCgaguagccgccgUGCGCGAUGUucGUCGCa -3'
miRNA:   3'- gCGGCUGCG-----------UG------------ACGCGCUGUA--CGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.