miRNA display CGI


Results 61 - 80 of 158 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22686 3' -59.1 NC_005091.1 + 16667 0.69 0.382736
Target:  5'- -cCCGACGCACcgaGCGaCGGCGUGggguaCGCa -3'
miRNA:   3'- gcGGCUGCGUGa--CGC-GCUGUACg----GCG- -5'
22686 3' -59.1 NC_005091.1 + 6598 0.69 0.382736
Target:  5'- aGUCGAUGauCGCUcGCGCGGCGUccggGCUGCc -3'
miRNA:   3'- gCGGCUGC--GUGA-CGCGCUGUA----CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 12453 0.69 0.382736
Target:  5'- cCGCCGuCGCACUGgcCGCG-CucGUCGCg -3'
miRNA:   3'- -GCGGCuGCGUGAC--GCGCuGuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 55915 0.69 0.382736
Target:  5'- gGCCGACcaACUGCGUGcGCAgGCgGCg -3'
miRNA:   3'- gCGGCUGcgUGACGCGC-UGUaCGgCG- -5'
22686 3' -59.1 NC_005091.1 + 31289 0.69 0.382736
Target:  5'- uGCCGGCGaGCaGCcgaucaucgGCGGCAUGUCGUu -3'
miRNA:   3'- gCGGCUGCgUGaCG---------CGCUGUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 50060 0.69 0.391415
Target:  5'- aGCCGACGaauCgaGCGCaacGCGUGCCGg -3'
miRNA:   3'- gCGGCUGCgu-Ga-CGCGc--UGUACGGCg -5'
22686 3' -59.1 NC_005091.1 + 52124 0.69 0.391415
Target:  5'- uCGCCGGCGCGggGCGCGu--UGCgGa -3'
miRNA:   3'- -GCGGCUGCGUgaCGCGCuguACGgCg -5'
22686 3' -59.1 NC_005091.1 + 680 0.69 0.391415
Target:  5'- aCGCgGACuGCGCcGCGCGAau--CCGCa -3'
miRNA:   3'- -GCGgCUG-CGUGaCGCGCUguacGGCG- -5'
22686 3' -59.1 NC_005091.1 + 33973 0.69 0.391415
Target:  5'- cCGCCGACGUACgccuucaGCGCGucCAUGUa-- -3'
miRNA:   3'- -GCGGCUGCGUGa------CGCGCu-GUACGgcg -5'
22686 3' -59.1 NC_005091.1 + 36517 0.68 0.400222
Target:  5'- gCGCCGAuaccgUGCGCaUGgaaGCGcCGUGCUGCg -3'
miRNA:   3'- -GCGGCU-----GCGUG-ACg--CGCuGUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 1405 0.68 0.400222
Target:  5'- aGUCGGUGCGCUGCccgucacccgGCGugAucgacugcuUGCCGCa -3'
miRNA:   3'- gCGGCUGCGUGACG----------CGCugU---------ACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 48763 0.68 0.409154
Target:  5'- gGCCGuGCGCACgcaUGaCGGCAUGCCuGUa -3'
miRNA:   3'- gCGGC-UGCGUGac-GC-GCUGUACGG-CG- -5'
22686 3' -59.1 NC_005091.1 + 44179 0.68 0.409154
Target:  5'- aCGUCucggauACGCcgUGCGCGACAgUGCCGUa -3'
miRNA:   3'- -GCGGc-----UGCGugACGCGCUGU-ACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 31405 0.68 0.409154
Target:  5'- gCGCCGaACGUGCaagGcCGCGugAUcGCUGCu -3'
miRNA:   3'- -GCGGC-UGCGUGa--C-GCGCugUA-CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 26427 0.68 0.417298
Target:  5'- cCGCCGGgGCugccaucguagcgGCcggGCGCGAgCAgGCCGCc -3'
miRNA:   3'- -GCGGCUgCG-------------UGa--CGCGCU-GUaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 25186 0.68 0.41821
Target:  5'- aGCCGGCGCGucgaUG-GCGACcgccuccgugGCCGCc -3'
miRNA:   3'- gCGGCUGCGUg---ACgCGCUGua--------CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 1994 0.68 0.41821
Target:  5'- uCGCCGAgGaC-CUucaaCGCGAUAUGUCGCa -3'
miRNA:   3'- -GCGGCUgC-GuGAc---GCGCUGUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 462 0.68 0.41821
Target:  5'- gGUCGaucaGCGCGCaG-GCGACAaGCCGCc -3'
miRNA:   3'- gCGGC----UGCGUGaCgCGCUGUaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 1379 0.68 0.421866
Target:  5'- aGCgCGAcguguuccuccuguuCGCGCcgaUGgGCGGCAUGCCGa -3'
miRNA:   3'- gCG-GCU---------------GCGUG---ACgCGCUGUACGGCg -5'
22686 3' -59.1 NC_005091.1 + 49043 0.68 0.43668
Target:  5'- uGCgGGCGCGCUGCuGCGcacCGUG-UGCg -3'
miRNA:   3'- gCGgCUGCGUGACG-CGCu--GUACgGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.