miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22686 3' -59.1 NC_005091.1 + 49593 0.66 0.525069
Target:  5'- -uCCGugGCug-GCGCGuucuGCcUGCCGCu -3'
miRNA:   3'- gcGGCugCGugaCGCGC----UGuACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 52197 0.66 0.525069
Target:  5'- gCGCCc-CGCGCcG-GCGACG-GCCGCc -3'
miRNA:   3'- -GCGGcuGCGUGaCgCGCUGUaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 54698 0.66 0.525069
Target:  5'- aGCCuACGCGgacaUGUGCGcCAUGCUGg -3'
miRNA:   3'- gCGGcUGCGUg---ACGCGCuGUACGGCg -5'
22686 3' -59.1 NC_005091.1 + 31871 0.66 0.525069
Target:  5'- uGUCGuCGCGCUcGUcgGCGGCcugcucGUGCCGUg -3'
miRNA:   3'- gCGGCuGCGUGA-CG--CGCUG------UACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 53993 0.66 0.525069
Target:  5'- gGCUGGCGCaauccGCUGUcCGACGaagcgguuuccuUGCUGCu -3'
miRNA:   3'- gCGGCUGCG-----UGACGcGCUGU------------ACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 36164 0.66 0.524046
Target:  5'- gCGCCGAaGUcCUGCGCGAgaaaCAUGuuccgaaggcuguCCGCu -3'
miRNA:   3'- -GCGGCUgCGuGACGCGCU----GUAC-------------GGCG- -5'
22686 3' -59.1 NC_005091.1 + 51591 0.66 0.514877
Target:  5'- uGaCgGGCGCGCagaaGCGCGGCAcgGgCGCg -3'
miRNA:   3'- gC-GgCUGCGUGa---CGCGCUGUa-CgGCG- -5'
22686 3' -59.1 NC_005091.1 + 51947 0.66 0.514877
Target:  5'- uGCCGAUGCGCU-CGCGAUccugaaugGUGa-GCa -3'
miRNA:   3'- gCGGCUGCGUGAcGCGCUG--------UACggCG- -5'
22686 3' -59.1 NC_005091.1 + 19464 0.66 0.514877
Target:  5'- uCGCCGAa-CACgacgGCcuGCGGCGUGCCc- -3'
miRNA:   3'- -GCGGCUgcGUGa---CG--CGCUGUACGGcg -5'
22686 3' -59.1 NC_005091.1 + 26143 0.66 0.513863
Target:  5'- uGUCGugGUAUcagcgcgUGCGCGGCGaGCUGa -3'
miRNA:   3'- gCGGCugCGUG-------ACGCGCUGUaCGGCg -5'
22686 3' -59.1 NC_005091.1 + 50626 0.66 0.511836
Target:  5'- uGuuGACGUACgcgGCGgcCGGuucgucguuccgcuCGUGCCGCa -3'
miRNA:   3'- gCggCUGCGUGa--CGC--GCU--------------GUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 3471 0.67 0.507792
Target:  5'- uCGCCGACccacuucaacugauuGCAgaGCgacacgaGCGGCAUGCCu- -3'
miRNA:   3'- -GCGGCUG---------------CGUgaCG-------CGCUGUACGGcg -5'
22686 3' -59.1 NC_005091.1 + 32116 0.67 0.504768
Target:  5'- uGCUcGCGuCGCUcGCcaagGCGACggGCCGCa -3'
miRNA:   3'- gCGGcUGC-GUGA-CG----CGCUGuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 15905 0.67 0.504768
Target:  5'- uCGCuCGGCGCGuc-CGCGAUAccgGCCGUa -3'
miRNA:   3'- -GCG-GCUGCGUgacGCGCUGUa--CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 13504 0.67 0.504768
Target:  5'- cCGCCGAgaccguucaCGuCGCUGCuCGACGccggGUCGCu -3'
miRNA:   3'- -GCGGCU---------GC-GUGACGcGCUGUa---CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 21734 0.67 0.494744
Target:  5'- --gCGGCGCAUgGgGCGACGUucgaacgaacgGCCGCc -3'
miRNA:   3'- gcgGCUGCGUGaCgCGCUGUA-----------CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 16214 0.67 0.494744
Target:  5'- cCGCCGuCGCGCccgGaucaGgGACGagGCCGCc -3'
miRNA:   3'- -GCGGCuGCGUGa--Cg---CgCUGUa-CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 2300 0.67 0.494744
Target:  5'- aGCCacGACGCAUcGCGaCGACGccgaagGUCGCc -3'
miRNA:   3'- gCGG--CUGCGUGaCGC-GCUGUa-----CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 41741 0.67 0.493747
Target:  5'- aCGCCGuauaaaaacuggcGCuGCACgaugGCGCGugcguACAUGCUGUc -3'
miRNA:   3'- -GCGGC-------------UG-CGUGa---CGCGC-----UGUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 44031 0.67 0.49275
Target:  5'- uCGCCGggaagcgacuGCGCccauucgacagACUGCGCGACGUacuccaucaucuCCGCg -3'
miRNA:   3'- -GCGGC----------UGCG-----------UGACGCGCUGUAc-----------GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.