miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22686 3' -59.1 NC_005091.1 + 107 0.74 0.169494
Target:  5'- aCGcCCGAcuCGCGCaUGCGCuGCAUGaCCGCg -3'
miRNA:   3'- -GC-GGCU--GCGUG-ACGCGcUGUAC-GGCG- -5'
22686 3' -59.1 NC_005091.1 + 462 0.68 0.41821
Target:  5'- gGUCGaucaGCGCGCaG-GCGACAaGCCGCc -3'
miRNA:   3'- gCGGC----UGCGUGaCgCGCUGUaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 499 0.66 0.529167
Target:  5'- gCGCCGuCGCG-UGCGUGAgaaccgcgcgcucucCccGCCGCu -3'
miRNA:   3'- -GCGGCuGCGUgACGCGCU---------------GuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 539 0.69 0.365766
Target:  5'- uCGCCuGCGCGCUGauCGACcgccgauUGCUGCu -3'
miRNA:   3'- -GCGGcUGCGUGACgcGCUGu------ACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 680 0.69 0.391415
Target:  5'- aCGCgGACuGCGCcGCGCGAau--CCGCa -3'
miRNA:   3'- -GCGgCUG-CGUGaCGCGCUguacGGCG- -5'
22686 3' -59.1 NC_005091.1 + 799 0.74 0.178631
Target:  5'- uGCCGAucucgUGCGCUGCGC----UGCCGCg -3'
miRNA:   3'- gCGGCU-----GCGUGACGCGcuguACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 1007 0.67 0.459451
Target:  5'- aCGCgGGCGCGCUGCuCGGCGUcaauacgacggaaCGCg -3'
miRNA:   3'- -GCGgCUGCGUGACGcGCUGUAcg-----------GCG- -5'
22686 3' -59.1 NC_005091.1 + 1379 0.68 0.421866
Target:  5'- aGCgCGAcguguuccuccuguuCGCGCcgaUGgGCGGCAUGCCGa -3'
miRNA:   3'- gCG-GCU---------------GCGUG---ACgCGCUGUACGGCg -5'
22686 3' -59.1 NC_005091.1 + 1405 0.68 0.400222
Target:  5'- aGUCGGUGCGCUGCccgucacccgGCGugAucgacugcuUGCCGCa -3'
miRNA:   3'- gCGGCUGCGUGACG----------CGCugU---------ACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 1607 0.67 0.474976
Target:  5'- gCGCCuACGCAUaUGUGcCGGCuuccGUGCUGCu -3'
miRNA:   3'- -GCGGcUGCGUG-ACGC-GCUG----UACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 1990 0.67 0.455611
Target:  5'- aCGCacaCGACGCugU-CGCGGcCAUGCUGg -3'
miRNA:   3'- -GCG---GCUGCGugAcGCGCU-GUACGGCg -5'
22686 3' -59.1 NC_005091.1 + 1994 0.68 0.41821
Target:  5'- uCGCCGAgGaC-CUucaaCGCGAUAUGUCGCa -3'
miRNA:   3'- -GCGGCUgC-GuGAc---GCGCUGUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 2300 0.67 0.494744
Target:  5'- aGCCacGACGCAUcGCGaCGACGccgaagGUCGCc -3'
miRNA:   3'- gCGG--CUGCGUGaCGC-GCUGUa-----CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 3328 0.66 0.544635
Target:  5'- uGUCGAagGCACgguugcuuccgGCGUgucccuuuucgaaGGCAUGCCGCu -3'
miRNA:   3'- gCGGCUg-CGUGa----------CGCG-------------CUGUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 3471 0.67 0.507792
Target:  5'- uCGCCGACccacuucaacugauuGCAgaGCgacacgaGCGGCAUGCCu- -3'
miRNA:   3'- -GCGGCUG---------------CGUgaCG-------CGCUGUACGGcg -5'
22686 3' -59.1 NC_005091.1 + 4224 0.72 0.243046
Target:  5'- gGCUGugGCAgaggaugaaGUGCGGCGUGCCGg -3'
miRNA:   3'- gCGGCugCGUga-------CGCGCUGUACGGCg -5'
22686 3' -59.1 NC_005091.1 + 4310 0.71 0.29599
Target:  5'- uGCUGACGUACgGCacgGUGACGggcgcGCCGCc -3'
miRNA:   3'- gCGGCUGCGUGaCG---CGCUGUa----CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 4736 0.67 0.455611
Target:  5'- --aCGACGCgcggaGCUGCGCGA--UGCUGUc -3'
miRNA:   3'- gcgGCUGCG-----UGACGCGCUguACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 4853 0.7 0.302477
Target:  5'- uGCCGACGUuuUGCGCgugcaguGACGUGgcgauCCGCu -3'
miRNA:   3'- gCGGCUGCGugACGCG-------CUGUAC-----GGCG- -5'
22686 3' -59.1 NC_005091.1 + 5836 0.73 0.21966
Target:  5'- gGCuCGAaGCGgUGCGCGGCGUG-CGCa -3'
miRNA:   3'- gCG-GCUgCGUgACGCGCUGUACgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.