miRNA display CGI


Results 41 - 60 of 158 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22686 3' -59.1 NC_005091.1 + 15905 0.67 0.504768
Target:  5'- uCGCuCGGCGCGuc-CGCGAUAccgGCCGUa -3'
miRNA:   3'- -GCG-GCUGCGUgacGCGCUGUa--CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 16019 0.67 0.464274
Target:  5'- gGCCGAcaagcguCGUGCUGcCGcCGGCcgGCgGCa -3'
miRNA:   3'- gCGGCU-------GCGUGAC-GC-GCUGuaCGgCG- -5'
22686 3' -59.1 NC_005091.1 + 16214 0.67 0.494744
Target:  5'- cCGCCGuCGCGCccgGaucaGgGACGagGCCGCc -3'
miRNA:   3'- -GCGGCuGCGUGa--Cg---CgCUGUa-CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 16308 0.66 0.552945
Target:  5'- uGCCGGCgGC-CUcgucccugauccggGCGCGACGgcgGgCGCg -3'
miRNA:   3'- gCGGCUG-CGuGA--------------CGCGCUGUa--CgGCG- -5'
22686 3' -59.1 NC_005091.1 + 16667 0.69 0.382736
Target:  5'- -cCCGACGCACcgaGCGaCGGCGUGggguaCGCa -3'
miRNA:   3'- gcGGCUGCGUGa--CGC-GCUGUACg----GCG- -5'
22686 3' -59.1 NC_005091.1 + 17475 0.67 0.480866
Target:  5'- gCGCCGACgaGCACaaucgagaucgucGCGCGGCAgaacaUGCCa- -3'
miRNA:   3'- -GCGGCUG--CGUGa------------CGCGCUGU-----ACGGcg -5'
22686 3' -59.1 NC_005091.1 + 18030 0.67 0.484812
Target:  5'- cCGCCGAacCGCACacccGuCGCG-CcgGCCGUc -3'
miRNA:   3'- -GCGGCU--GCGUGa---C-GCGCuGuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 18780 0.74 0.178631
Target:  5'- -cCCGGCGCACaucaucuaugaaUGCGCGACGaaCCGCg -3'
miRNA:   3'- gcGGCUGCGUG------------ACGCGCUGUacGGCG- -5'
22686 3' -59.1 NC_005091.1 + 19366 0.71 0.268466
Target:  5'- aGUCGcACGgGCUuucguuuCGCGACAUGCUGCg -3'
miRNA:   3'- gCGGC-UGCgUGAc------GCGCUGUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 19464 0.66 0.514877
Target:  5'- uCGCCGAa-CACgacgGCcuGCGGCGUGCCc- -3'
miRNA:   3'- -GCGGCUgcGUGa---CG--CGCUGUACGGcg -5'
22686 3' -59.1 NC_005091.1 + 20265 0.69 0.382736
Target:  5'- gGCCGACGCgucgccgcuuuGCgaguagccgccgUGCGCGAUGUucGUCGCa -3'
miRNA:   3'- gCGGCUGCG-----------UG------------ACGCGCUGUA--CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 21598 0.66 0.556072
Target:  5'- aGCCGAgGCGa--CGCGGCAgaGCaCGCu -3'
miRNA:   3'- gCGGCUgCGUgacGCGCUGUa-CG-GCG- -5'
22686 3' -59.1 NC_005091.1 + 21711 0.71 0.268466
Target:  5'- gCGUCGucuGCGUAUaGCGCGugAUGUCGUa -3'
miRNA:   3'- -GCGGC---UGCGUGaCGCGCugUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 21734 0.67 0.494744
Target:  5'- --gCGGCGCAUgGgGCGACGUucgaacgaacgGCCGCc -3'
miRNA:   3'- gcgGCUGCGUGaCgCGCUGUA-----------CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 22152 0.66 0.556072
Target:  5'- gCGCCcGCGCAgUGCGUacaGCAauCCGCg -3'
miRNA:   3'- -GCGGcUGCGUgACGCGc--UGUacGGCG- -5'
22686 3' -59.1 NC_005091.1 + 22231 0.75 0.155331
Target:  5'- uGCUGuACGCACUGCGCGggcGCGucacgccuuuuggcUGCCGUc -3'
miRNA:   3'- gCGGC-UGCGUGACGCGC---UGU--------------ACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 22747 0.66 0.525069
Target:  5'- cCGCCGGC-CGuCaGCGCGGCGUucaGgCGCg -3'
miRNA:   3'- -GCGGCUGcGU-GaCGCGCUGUA---CgGCG- -5'
22686 3' -59.1 NC_005091.1 + 22845 0.7 0.325657
Target:  5'- uGCCGAgCGCAC-GCGCcuGAac-GCCGCg -3'
miRNA:   3'- gCGGCU-GCGUGaCGCG--CUguaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 23265 1.1 0.000415
Target:  5'- uCGCCGACGCACUGCGCGACAUGCCGCc -3'
miRNA:   3'- -GCGGCUGCGUGACGCGCUGUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 23331 0.68 0.43668
Target:  5'- gCGUCGGCGaGCUGguuUGCGAaCGcGCCGCg -3'
miRNA:   3'- -GCGGCUGCgUGAC---GCGCU-GUaCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.