miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22686 3' -59.1 NC_005091.1 + 57933 0.69 0.365766
Target:  5'- uCGCCuGCGCGCUGauCGACcgccgauUGCUGCu -3'
miRNA:   3'- -GCGGcUGCGUGACgcGCUGu------ACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 57893 0.66 0.529167
Target:  5'- gCGCCGuCGCG-UGCGUGAgaaccgcgcgcucucCccGCCGCu -3'
miRNA:   3'- -GCGGCuGCGUgACGCGCU---------------GuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 57856 0.7 0.341299
Target:  5'- gGUCGaucaGCGCGCaG-GCGACAaGCCGCg -3'
miRNA:   3'- gCGGC----UGCGUGaCgCGCUGUaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 57500 0.74 0.169494
Target:  5'- aCGcCCGAcuCGCGCaUGCGCuGCAUGaCCGCg -3'
miRNA:   3'- -GC-GGCU--GCGUG-ACGCGcUGUAC-GGCG- -5'
22686 3' -59.1 NC_005091.1 + 56949 0.69 0.374186
Target:  5'- --gCGACGCAgaGCG-GGCcgGCCGUg -3'
miRNA:   3'- gcgGCUGCGUgaCGCgCUGuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 56897 0.7 0.344492
Target:  5'- uGCCGuCGCugGCUGCGCGguGCAgccacgccaucgcguUGcCCGCg -3'
miRNA:   3'- gCGGCuGCG--UGACGCGC--UGU---------------AC-GGCG- -5'
22686 3' -59.1 NC_005091.1 + 55998 0.66 0.535336
Target:  5'- uGCCGAaGUAaucaUGCGCG-CcgGCCGa -3'
miRNA:   3'- gCGGCUgCGUg---ACGCGCuGuaCGGCg -5'
22686 3' -59.1 NC_005091.1 + 55915 0.69 0.382736
Target:  5'- gGCCGACcaACUGCGUGcGCAgGCgGCg -3'
miRNA:   3'- gCGGCUGcgUGACGCGC-UGUaCGgCG- -5'
22686 3' -59.1 NC_005091.1 + 55674 0.68 0.446089
Target:  5'- uCGCCGAucgccgccUGCACgaGCGCGugGa-CCGCg -3'
miRNA:   3'- -GCGGCU--------GCGUGa-CGCGCugUacGGCG- -5'
22686 3' -59.1 NC_005091.1 + 54936 0.67 0.455611
Target:  5'- cCGCCGcaACGCGCUcgccaagcgccGCGCGGCugucCCGUu -3'
miRNA:   3'- -GCGGC--UGCGUGA-----------CGCGCUGuac-GGCG- -5'
22686 3' -59.1 NC_005091.1 + 54698 0.66 0.525069
Target:  5'- aGCCuACGCGgacaUGUGCGcCAUGCUGg -3'
miRNA:   3'- gCGGcUGCGUg---ACGCGCuGUACGGCg -5'
22686 3' -59.1 NC_005091.1 + 54600 0.67 0.482837
Target:  5'- uCGCCG-CGCGauuccagcaugGCGC-ACAUGuCCGCg -3'
miRNA:   3'- -GCGGCuGCGUga---------CGCGcUGUAC-GGCG- -5'
22686 3' -59.1 NC_005091.1 + 54325 0.66 0.545672
Target:  5'- gGUCGA-GCGCUuCGCG-CAUGUCGUc -3'
miRNA:   3'- gCGGCUgCGUGAcGCGCuGUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 54111 0.67 0.465242
Target:  5'- gCGCCGugcaauUGCGCUugcacauaGCGCGGCAucaaUGCCucGCg -3'
miRNA:   3'- -GCGGCu-----GCGUGA--------CGCGCUGU----ACGG--CG- -5'
22686 3' -59.1 NC_005091.1 + 54100 0.74 0.174009
Target:  5'- gCGCCGuCGCGCUGgaaaaGCGagacGCcgGCCGCu -3'
miRNA:   3'- -GCGGCuGCGUGACg----CGC----UGuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 54010 0.67 0.474976
Target:  5'- gGCCGGCGUcucGCUuuuccaGCGCGACGg--CGCa -3'
miRNA:   3'- gCGGCUGCG---UGA------CGCGCUGUacgGCG- -5'
22686 3' -59.1 NC_005091.1 + 53993 0.66 0.525069
Target:  5'- gGCUGGCGCaauccGCUGUcCGACGaagcgguuuccuUGCUGCu -3'
miRNA:   3'- gCGGCUGCG-----UGACGcGCUGU------------ACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 53660 0.67 0.454654
Target:  5'- uCGCCGcacggguACGCGUUGCGCucGGCAaUGCuCGCa -3'
miRNA:   3'- -GCGGC-------UGCGUGACGCG--CUGU-ACG-GCG- -5'
22686 3' -59.1 NC_005091.1 + 53141 0.73 0.208704
Target:  5'- -aCCGGCGCGCUGUcucGCGugAUuCCGCu -3'
miRNA:   3'- gcGGCUGCGUGACG---CGCugUAcGGCG- -5'
22686 3' -59.1 NC_005091.1 + 52773 0.76 0.119713
Target:  5'- aGCCGuCGCACUgGC-CGGCGUGCgCGCc -3'
miRNA:   3'- gCGGCuGCGUGA-CGcGCUGUACG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.