miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22686 3' -59.1 NC_005091.1 + 52197 0.66 0.525069
Target:  5'- gCGCCc-CGCGCcG-GCGACG-GCCGCc -3'
miRNA:   3'- -GCGGcuGCGUGaCgCGCUGUaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 52124 0.69 0.391415
Target:  5'- uCGCCGGCGCGggGCGCGu--UGCgGa -3'
miRNA:   3'- -GCGGCUGCGUgaCGCGCuguACGgCg -5'
22686 3' -59.1 NC_005091.1 + 52082 0.71 0.275148
Target:  5'- -uCCGcCGCAUUgGCGCGGCcguAUGCCGUg -3'
miRNA:   3'- gcGGCuGCGUGA-CGCGCUG---UACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 52033 0.69 0.374186
Target:  5'- gGCCGuaGCGCACUcggcuacucGCGUcacGGCGUGuuGCu -3'
miRNA:   3'- gCGGC--UGCGUGA---------CGCG---CUGUACggCG- -5'
22686 3' -59.1 NC_005091.1 + 51947 0.66 0.514877
Target:  5'- uGCCGAUGCGCU-CGCGAUccugaaugGUGa-GCa -3'
miRNA:   3'- gCGGCUGCGUGAcGCGCUG--------UACggCG- -5'
22686 3' -59.1 NC_005091.1 + 51852 0.71 0.29599
Target:  5'- uCGCgGAUGCgauGCUGCGCGA---GUCGCg -3'
miRNA:   3'- -GCGgCUGCG---UGACGCGCUguaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 51591 0.66 0.514877
Target:  5'- uGaCgGGCGCGCagaaGCGCGGCAcgGgCGCg -3'
miRNA:   3'- gC-GgCUGCGUGa---CGCGCUGUa-CgGCG- -5'
22686 3' -59.1 NC_005091.1 + 51512 0.72 0.249207
Target:  5'- gGCUGuCGaCGCUGCGCGuGCA-GUCGCg -3'
miRNA:   3'- gCGGCuGC-GUGACGCGC-UGUaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 50667 0.72 0.249207
Target:  5'- aCG-CGACGCugUuGCGCGACua-CCGCa -3'
miRNA:   3'- -GCgGCUGCGugA-CGCGCUGuacGGCG- -5'
22686 3' -59.1 NC_005091.1 + 50626 0.66 0.511836
Target:  5'- uGuuGACGUACgcgGCGgcCGGuucgucguuccgcuCGUGCCGCa -3'
miRNA:   3'- gCggCUGCGUGa--CGC--GCU--------------GUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 50363 0.67 0.474976
Target:  5'- aGCCGACGaugGCUGa--GACGaucGCCGCa -3'
miRNA:   3'- gCGGCUGCg--UGACgcgCUGUa--CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 50126 0.66 0.545672
Target:  5'- gCGCCGacuacagggGCGCACUG-Ga-ACcgGCCGCc -3'
miRNA:   3'- -GCGGC---------UGCGUGACgCgcUGuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 50060 0.69 0.391415
Target:  5'- aGCCGACGaauCgaGCGCaacGCGUGCCGg -3'
miRNA:   3'- gCGGCUGCgu-Ga-CGCGc--UGUACGGCg -5'
22686 3' -59.1 NC_005091.1 + 49852 0.67 0.455611
Target:  5'- aGCCGAgCGUGCUGCaUGcCAaGCCGUg -3'
miRNA:   3'- gCGGCU-GCGUGACGcGCuGUaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 49814 0.66 0.556072
Target:  5'- aCGaCUcACGCACgGC-CGACGUGCCccGCa -3'
miRNA:   3'- -GC-GGcUGCGUGaCGcGCUGUACGG--CG- -5'
22686 3' -59.1 NC_005091.1 + 49701 0.78 0.101366
Target:  5'- gGUCGACGCAUUGCGCGuagcucuGCAUGCgGg -3'
miRNA:   3'- gCGGCUGCGUGACGCGC-------UGUACGgCg -5'
22686 3' -59.1 NC_005091.1 + 49593 0.66 0.525069
Target:  5'- -uCCGugGCug-GCGCGuucuGCcUGCCGCu -3'
miRNA:   3'- gcGGCugCGugaCGCGC----UGuACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 49358 0.69 0.349321
Target:  5'- aCGcCCGACGaACUGCGCcuCGUGUgGCu -3'
miRNA:   3'- -GC-GGCUGCgUGACGCGcuGUACGgCG- -5'
22686 3' -59.1 NC_005091.1 + 49043 0.68 0.43668
Target:  5'- uGCgGGCGCGCUGCuGCGcacCGUG-UGCg -3'
miRNA:   3'- gCGgCUGCGUGACG-CGCu--GUACgGCG- -5'
22686 3' -59.1 NC_005091.1 + 48808 0.77 0.116506
Target:  5'- aGCUgugaGACGCGCUGCGCcguacggccgauGACAUGCgGCc -3'
miRNA:   3'- gCGG----CUGCGUGACGCG------------CUGUACGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.