miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22686 3' -59.1 NC_005091.1 + 48763 0.68 0.409154
Target:  5'- gGCCGuGCGCACgcaUGaCGGCAUGCCuGUa -3'
miRNA:   3'- gCGGC-UGCGUGac-GC-GCUGUACGG-CG- -5'
22686 3' -59.1 NC_005091.1 + 46260 0.7 0.333411
Target:  5'- gGCCGuCGUACUGgugaaacaGCGcCAUGCCGa -3'
miRNA:   3'- gCGGCuGCGUGACg-------CGCuGUACGGCg -5'
22686 3' -59.1 NC_005091.1 + 45788 0.7 0.303204
Target:  5'- aGCCGGCGCGgcGCGCGGCcga-CGCg -3'
miRNA:   3'- gCGGCUGCGUgaCGCGCUGuacgGCG- -5'
22686 3' -59.1 NC_005091.1 + 45228 0.69 0.357477
Target:  5'- aCGCuCGGCGCuCUGuCGUcuACcgGCCGCg -3'
miRNA:   3'- -GCG-GCUGCGuGAC-GCGc-UGuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 44448 0.66 0.545672
Target:  5'- uGCCGGUGCACc-CGCca-GUGCCGCu -3'
miRNA:   3'- gCGGCUGCGUGacGCGcugUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 44179 0.68 0.409154
Target:  5'- aCGUCucggauACGCcgUGCGCGACAgUGCCGUa -3'
miRNA:   3'- -GCGGc-----UGCGugACGCGCUGU-ACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 44031 0.67 0.49275
Target:  5'- uCGCCGggaagcgacuGCGCccauucgacagACUGCGCGACGUacuccaucaucuCCGCg -3'
miRNA:   3'- -GCGGC----------UGCG-----------UGACGCGCUGUAc-----------GGCG- -5'
22686 3' -59.1 NC_005091.1 + 42075 0.67 0.455611
Target:  5'- uGCUucuGCGCACcugaagcgUGCcacgGCGACGUGCUGCu -3'
miRNA:   3'- gCGGc--UGCGUG--------ACG----CGCUGUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 41959 0.66 0.556072
Target:  5'- uGCCGACGUGCgGCcuCGACAUuuacucGgCGCa -3'
miRNA:   3'- gCGGCUGCGUGaCGc-GCUGUA------CgGCG- -5'
22686 3' -59.1 NC_005091.1 + 41741 0.67 0.493747
Target:  5'- aCGCCGuauaaaaacuggcGCuGCACgaugGCGCGugcguACAUGCUGUc -3'
miRNA:   3'- -GCGGC-------------UG-CGUGa---CGCGC-----UGUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 40964 0.67 0.484812
Target:  5'- cCGCCca-GCGCUGCGUG-CGcUGCgCGCc -3'
miRNA:   3'- -GCGGcugCGUGACGCGCuGU-ACG-GCG- -5'
22686 3' -59.1 NC_005091.1 + 37232 0.71 0.298859
Target:  5'- aCGCCGggcGCGUACgUGgGCGAuugguucaacgagacCGUGCCGUa -3'
miRNA:   3'- -GCGGC---UGCGUG-ACgCGCU---------------GUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 36962 0.67 0.465242
Target:  5'- gCGCgaugaUGGCGCGCUcGCGCGACA--CCGa -3'
miRNA:   3'- -GCG-----GCUGCGUGA-CGCGCUGUacGGCg -5'
22686 3' -59.1 NC_005091.1 + 36575 0.66 0.535336
Target:  5'- gGCCGAgaauccccuUGCAUggggGCGCuuCGUGCgGCg -3'
miRNA:   3'- gCGGCU---------GCGUGa---CGCGcuGUACGgCG- -5'
22686 3' -59.1 NC_005091.1 + 36517 0.68 0.400222
Target:  5'- gCGCCGAuaccgUGCGCaUGgaaGCGcCGUGCUGCg -3'
miRNA:   3'- -GCGGCU-----GCGUG-ACg--CGCuGUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 36283 0.7 0.302477
Target:  5'- aCGCCauucauccagaaaGACGCAaUGCGCGagcgucgcgGCGUGCCGa -3'
miRNA:   3'- -GCGG-------------CUGCGUgACGCGC---------UGUACGGCg -5'
22686 3' -59.1 NC_005091.1 + 36164 0.66 0.524046
Target:  5'- gCGCCGAaGUcCUGCGCGAgaaaCAUGuuccgaaggcuguCCGCu -3'
miRNA:   3'- -GCGGCUgCGuGACGCGCU----GUAC-------------GGCG- -5'
22686 3' -59.1 NC_005091.1 + 35661 0.7 0.341299
Target:  5'- aGCCGACuCGCgUGCGCGG-AUGCCccgGCu -3'
miRNA:   3'- gCGGCUGcGUG-ACGCGCUgUACGG---CG- -5'
22686 3' -59.1 NC_005091.1 + 35303 0.67 0.474976
Target:  5'- uCGCCGcCGCGCUgGCGUGACccacuaCCGg -3'
miRNA:   3'- -GCGGCuGCGUGA-CGCGCUGuac---GGCg -5'
22686 3' -59.1 NC_005091.1 + 35239 0.71 0.261916
Target:  5'- uGCCGGCaGUACcuCGCGGCGgcGCCGCg -3'
miRNA:   3'- gCGGCUG-CGUGacGCGCUGUa-CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.