miRNA display CGI


Results 61 - 80 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22686 3' -59.1 NC_005091.1 + 35213 0.66 0.535336
Target:  5'- --nCGACGCguaccacaaGCUGC-UGACcgGCCGCu -3'
miRNA:   3'- gcgGCUGCG---------UGACGcGCUGuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 35158 0.67 0.484812
Target:  5'- gCGCCGcCGCgagguACUGC-CGGCAgGuuGCa -3'
miRNA:   3'- -GCGGCuGCG-----UGACGcGCUGUaCggCG- -5'
22686 3' -59.1 NC_005091.1 + 34846 0.78 0.093604
Target:  5'- uCGCCGACGCGCgcgGcCGgGACAUGgCCGa -3'
miRNA:   3'- -GCGGCUGCGUGa--C-GCgCUGUAC-GGCg -5'
22686 3' -59.1 NC_005091.1 + 34727 0.66 0.556072
Target:  5'- aGCCGAcCGCGCcGUuCGugAaGCCGUc -3'
miRNA:   3'- gCGGCU-GCGUGaCGcGCugUaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 34690 0.67 0.455611
Target:  5'- aGCCG--GUACUGCGCGcccACGaugcUGUCGCg -3'
miRNA:   3'- gCGGCugCGUGACGCGC---UGU----ACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 34545 0.67 0.474976
Target:  5'- uGCCgaGugGgACcGCGCGGCGaaccgGCCGUa -3'
miRNA:   3'- gCGG--CugCgUGaCGCGCUGUa----CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 34445 0.73 0.216322
Target:  5'- aCGCuuCGACGCgGCgugcaguacgacaaGCGCGGCcgGCCGCa -3'
miRNA:   3'- -GCG--GCUGCG-UGa-------------CGCGCUGuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 34312 0.69 0.356656
Target:  5'- uCGCCGggguGCGCGacCUGaauccaguagcccUGCGGCcgGCCGCg -3'
miRNA:   3'- -GCGGC----UGCGU--GAC-------------GCGCUGuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 33973 0.69 0.391415
Target:  5'- cCGCCGACGUACgccuucaGCGCGucCAUGUa-- -3'
miRNA:   3'- -GCGGCUGCGUGa------CGCGCu-GUACGgcg -5'
22686 3' -59.1 NC_005091.1 + 33220 0.78 0.098894
Target:  5'- gGCCGGCGUAaUGCGCGGCGaccaucUGcCCGCg -3'
miRNA:   3'- gCGGCUGCGUgACGCGCUGU------AC-GGCG- -5'
22686 3' -59.1 NC_005091.1 + 33107 0.67 0.488773
Target:  5'- gGCCGcgcucugaaagccauACGC-CUGUGCGAguUGCgUGCg -3'
miRNA:   3'- gCGGC---------------UGCGuGACGCGCUguACG-GCG- -5'
22686 3' -59.1 NC_005091.1 + 32116 0.67 0.504768
Target:  5'- uGCUcGCGuCGCUcGCcaagGCGACggGCCGCa -3'
miRNA:   3'- gCGGcUGC-GUGA-CG----CGCUGuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 31871 0.66 0.525069
Target:  5'- uGUCGuCGCGCUcGUcgGCGGCcugcucGUGCCGUg -3'
miRNA:   3'- gCGGCuGCGUGA-CG--CGCUG------UACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 31710 0.75 0.160778
Target:  5'- gCGCCGGcCGCcuucgGCUGCGcCGAaAUGCCGUa -3'
miRNA:   3'- -GCGGCU-GCG-----UGACGC-GCUgUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 31405 0.68 0.409154
Target:  5'- gCGCCGaACGUGCaagGcCGCGugAUcGCUGCu -3'
miRNA:   3'- -GCGGC-UGCGUGa--C-GCGCugUA-CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 31289 0.69 0.382736
Target:  5'- uGCCGGCGaGCaGCcgaucaucgGCGGCAUGUCGUu -3'
miRNA:   3'- gCGGCUGCgUGaCG---------CGCUGUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 31173 0.7 0.33263
Target:  5'- aCGaCCGcuuggaaGCGCucCUGCaaCGACAUGCCGCc -3'
miRNA:   3'- -GC-GGC-------UGCGu-GACGc-GCUGUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 30141 0.67 0.455611
Target:  5'- gGCCGACGCuuucGCGCGGgGcuucGCCGg -3'
miRNA:   3'- gCGGCUGCGuga-CGCGCUgUa---CGGCg -5'
22686 3' -59.1 NC_005091.1 + 29874 0.74 0.178631
Target:  5'- aGCCGuCGCGCUGCaaUGugAUGCCGa -3'
miRNA:   3'- gCGGCuGCGUGACGc-GCugUACGGCg -5'
22686 3' -59.1 NC_005091.1 + 29361 0.67 0.484812
Target:  5'- aCGCUGcACGCgACggaugGCGCGACGaaGCUGUc -3'
miRNA:   3'- -GCGGC-UGCG-UGa----CGCGCUGUa-CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.