miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22686 3' -59.1 NC_005091.1 + 28266 0.7 0.333411
Target:  5'- cCGgCGACGCGCuggcggcuUGCGUGACcuucgccuUGCUGCc -3'
miRNA:   3'- -GCgGCUGCGUG--------ACGCGCUGu-------ACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 27945 0.72 0.237012
Target:  5'- gGCCGuACGCGUUGUGCGAgAUGaaGCg -3'
miRNA:   3'- gCGGC-UGCGUGACGCGCUgUACggCG- -5'
22686 3' -59.1 NC_005091.1 + 21711 0.71 0.268466
Target:  5'- gCGUCGucuGCGUAUaGCGCGugAUGUCGUa -3'
miRNA:   3'- -GCGGC---UGCGUGaCGCGCugUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 26563 0.71 0.274474
Target:  5'- cCGCCuucgcGACGCGCUGgGUGAgucguucgaagucCcgGCCGCc -3'
miRNA:   3'- -GCGG-----CUGCGUGACgCGCU-------------GuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 52082 0.71 0.275148
Target:  5'- -uCCGcCGCAUUgGCGCGGCcguAUGCCGUg -3'
miRNA:   3'- gcGGCuGCGUGA-CGCGCUG---UACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 10841 0.71 0.29599
Target:  5'- -cCCGuACGCGCUGCGUGuCAUGCaGUu -3'
miRNA:   3'- gcGGC-UGCGUGACGCGCuGUACGgCG- -5'
22686 3' -59.1 NC_005091.1 + 36283 0.7 0.302477
Target:  5'- aCGCCauucauccagaaaGACGCAaUGCGCGagcgucgcgGCGUGCCGa -3'
miRNA:   3'- -GCGG-------------CUGCGUgACGCGC---------UGUACGGCg -5'
22686 3' -59.1 NC_005091.1 + 23649 0.7 0.318038
Target:  5'- uGUCGcACGUACUGCGUcuGCGUGCUGa -3'
miRNA:   3'- gCGGC-UGCGUGACGCGc-UGUACGGCg -5'
22686 3' -59.1 NC_005091.1 + 31173 0.7 0.33263
Target:  5'- aCGaCCGcuuggaaGCGCucCUGCaaCGACAUGCCGCc -3'
miRNA:   3'- -GC-GGC-------UGCGu-GACGc-GCUGUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 5836 0.73 0.21966
Target:  5'- gGCuCGAaGCGgUGCGCGGCGUG-CGCa -3'
miRNA:   3'- gCG-GCUgCGUgACGCGCUGUACgGCG- -5'
22686 3' -59.1 NC_005091.1 + 53141 0.73 0.208704
Target:  5'- -aCCGGCGCGCUGUcucGCGugAUuCCGCu -3'
miRNA:   3'- gcGGCUGCGUGACG---CGCugUAcGGCG- -5'
22686 3' -59.1 NC_005091.1 + 26390 0.73 0.203404
Target:  5'- gGCauucaGGCGguCUGCuGCGGCA-GCCGCa -3'
miRNA:   3'- gCGg----CUGCguGACG-CGCUGUaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 28709 0.82 0.052126
Target:  5'- aCGCCGGgGC-CUGCGCG-CAUGCCaGCa -3'
miRNA:   3'- -GCGGCUgCGuGACGCGCuGUACGG-CG- -5'
22686 3' -59.1 NC_005091.1 + 26025 0.79 0.081528
Target:  5'- aCGCCGACGUACgccguggcgaGCGCGAuCAgcucGCCGCg -3'
miRNA:   3'- -GCGGCUGCGUGa---------CGCGCU-GUa---CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 33220 0.78 0.098894
Target:  5'- gGCCGGCGUAaUGCGCGGCGaccaucUGcCCGCg -3'
miRNA:   3'- gCGGCUGCGUgACGCGCUGU------AC-GGCG- -5'
22686 3' -59.1 NC_005091.1 + 49701 0.78 0.101366
Target:  5'- gGUCGACGCAUUGCGCGuagcucuGCAUGCgGg -3'
miRNA:   3'- gCGGCUGCGUGACGCGC-------UGUACGgCg -5'
22686 3' -59.1 NC_005091.1 + 48808 0.77 0.116506
Target:  5'- aGCUgugaGACGCGCUGCGCcguacggccgauGACAUGCgGCc -3'
miRNA:   3'- gCGG----CUGCGUGACGCG------------CUGUACGgCG- -5'
22686 3' -59.1 NC_005091.1 + 31710 0.75 0.160778
Target:  5'- gCGCCGGcCGCcuucgGCUGCGcCGAaAUGCCGUa -3'
miRNA:   3'- -GCGGCU-GCG-----UGACGC-GCUgUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 29874 0.74 0.178631
Target:  5'- aGCCGuCGCGCUGCaaUGugAUGCCGa -3'
miRNA:   3'- gCGGCuGCGUGACGc-GCugUACGGCg -5'
22686 3' -59.1 NC_005091.1 + 799 0.74 0.178631
Target:  5'- uGCCGAucucgUGCGCUGCGC----UGCCGCg -3'
miRNA:   3'- gCGGCU-----GCGUGACGCGcuguACGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.