miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22686 3' -59.1 NC_005091.1 + 48808 0.77 0.116506
Target:  5'- aGCUgugaGACGCGCUGCGCcguacggccgauGACAUGCgGCc -3'
miRNA:   3'- gCGG----CUGCGUGACGCG------------CUGUACGgCG- -5'
22686 3' -59.1 NC_005091.1 + 49701 0.78 0.101366
Target:  5'- gGUCGACGCAUUGCGCGuagcucuGCAUGCgGg -3'
miRNA:   3'- gCGGCUGCGUGACGCGC-------UGUACGgCg -5'
22686 3' -59.1 NC_005091.1 + 33220 0.78 0.098894
Target:  5'- gGCCGGCGUAaUGCGCGGCGaccaucUGcCCGCg -3'
miRNA:   3'- gCGGCUGCGUgACGCGCUGU------AC-GGCG- -5'
22686 3' -59.1 NC_005091.1 + 26025 0.79 0.081528
Target:  5'- aCGCCGACGUACgccguggcgaGCGCGAuCAgcucGCCGCg -3'
miRNA:   3'- -GCGGCUGCGUGa---------CGCGCU-GUa---CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 28709 0.82 0.052126
Target:  5'- aCGCCGGgGC-CUGCGCG-CAUGCCaGCa -3'
miRNA:   3'- -GCGGCUgCGuGACGCGCuGUACGG-CG- -5'
22686 3' -59.1 NC_005091.1 + 26563 0.71 0.274474
Target:  5'- cCGCCuucgcGACGCGCUGgGUGAgucguucgaagucCcgGCCGCc -3'
miRNA:   3'- -GCGG-----CUGCGUGACgCGCU-------------GuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 52082 0.71 0.275148
Target:  5'- -uCCGcCGCAUUgGCGCGGCcguAUGCCGUg -3'
miRNA:   3'- gcGGCuGCGUGA-CGCGCUG---UACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 6598 0.69 0.382736
Target:  5'- aGUCGAUGauCGCUcGCGCGGCGUccggGCUGCc -3'
miRNA:   3'- gCGGCUGC--GUGA-CGCGCUGUA----CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 45228 0.69 0.357477
Target:  5'- aCGCuCGGCGCuCUGuCGUcuACcgGCCGCg -3'
miRNA:   3'- -GCG-GCUGCGuGAC-GCGc-UGuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 14497 0.69 0.357477
Target:  5'- uGCUGaACGuCGgUGCGCcgguaaGCGUGCCGCu -3'
miRNA:   3'- gCGGC-UGC-GUgACGCGc-----UGUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 11956 0.69 0.357477
Target:  5'- aGCCGuCGUcCUGCGUGACggugacGUGCuCGUg -3'
miRNA:   3'- gCGGCuGCGuGACGCGCUG------UACG-GCG- -5'
22686 3' -59.1 NC_005091.1 + 34312 0.69 0.356656
Target:  5'- uCGCCGggguGCGCGacCUGaauccaguagcccUGCGGCcgGCCGCg -3'
miRNA:   3'- -GCGGC----UGCGU--GAC-------------GCGCUGuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 24348 0.7 0.341299
Target:  5'- cCGCCGAUcuucugGUACUuCGCGAuCGUGUCGUa -3'
miRNA:   3'- -GCGGCUG------CGUGAcGCGCU-GUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 57856 0.7 0.341299
Target:  5'- gGUCGaucaGCGCGCaG-GCGACAaGCCGCg -3'
miRNA:   3'- gCGGC----UGCGUGaCgCGCUGUaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 35661 0.7 0.341299
Target:  5'- aGCCGACuCGCgUGCGCGG-AUGCCccgGCu -3'
miRNA:   3'- gCGGCUGcGUG-ACGCGCUgUACGG---CG- -5'
22686 3' -59.1 NC_005091.1 + 28266 0.7 0.333411
Target:  5'- cCGgCGACGCGCuggcggcuUGCGUGACcuucgccuUGCUGCc -3'
miRNA:   3'- -GCgGCUGCGUG--------ACGCGCUGu-------ACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 31173 0.7 0.33263
Target:  5'- aCGaCCGcuuggaaGCGCucCUGCaaCGACAUGCCGCc -3'
miRNA:   3'- -GC-GGC-------UGCGu-GACGc-GCUGUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 23649 0.7 0.318038
Target:  5'- uGUCGcACGUACUGCGUcuGCGUGCUGa -3'
miRNA:   3'- gCGGC-UGCGUGACGCGc-UGUACGGCg -5'
22686 3' -59.1 NC_005091.1 + 36283 0.7 0.302477
Target:  5'- aCGCCauucauccagaaaGACGCAaUGCGCGagcgucgcgGCGUGCCGa -3'
miRNA:   3'- -GCGG-------------CUGCGUgACGCGC---------UGUACGGCg -5'
22686 3' -59.1 NC_005091.1 + 10841 0.71 0.29599
Target:  5'- -cCCGuACGCGCUGCGUGuCAUGCaGUu -3'
miRNA:   3'- gcGGC-UGCGUGACGCGCuGUACGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.