miRNA display CGI


Results 61 - 80 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22686 3' -59.1 NC_005091.1 + 680 0.69 0.391415
Target:  5'- aCGCgGACuGCGCcGCGCGAau--CCGCa -3'
miRNA:   3'- -GCGgCUG-CGUGaCGCGCUguacGGCG- -5'
22686 3' -59.1 NC_005091.1 + 33973 0.69 0.391415
Target:  5'- cCGCCGACGUACgccuucaGCGCGucCAUGUa-- -3'
miRNA:   3'- -GCGGCUGCGUGa------CGCGCu-GUACGgcg -5'
22686 3' -59.1 NC_005091.1 + 52124 0.69 0.391415
Target:  5'- uCGCCGGCGCGggGCGCGu--UGCgGa -3'
miRNA:   3'- -GCGGCUGCGUgaCGCGCuguACGgCg -5'
22686 3' -59.1 NC_005091.1 + 44179 0.68 0.409154
Target:  5'- aCGUCucggauACGCcgUGCGCGACAgUGCCGUa -3'
miRNA:   3'- -GCGGc-----UGCGugACGCGCUGU-ACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 462 0.68 0.41821
Target:  5'- gGUCGaucaGCGCGCaG-GCGACAaGCCGCc -3'
miRNA:   3'- gCGGC----UGCGUGaCgCGCUGUaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 1379 0.68 0.421866
Target:  5'- aGCgCGAcguguuccuccuguuCGCGCcgaUGgGCGGCAUGCCGa -3'
miRNA:   3'- gCG-GCU---------------GCGUG---ACgCGCUGUACGGCg -5'
22686 3' -59.1 NC_005091.1 + 49043 0.68 0.43668
Target:  5'- uGCgGGCGCGCUGCuGCGcacCGUG-UGCg -3'
miRNA:   3'- gCGgCUGCGUGACG-CGCu--GUACgGCG- -5'
22686 3' -59.1 NC_005091.1 + 23389 0.68 0.44043
Target:  5'- aGCCGACGCAgCgccGCcgaacagaccgagcaGCGcCAUcGCCGCg -3'
miRNA:   3'- gCGGCUGCGU-Ga--CG---------------CGCuGUA-CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 20265 0.69 0.382736
Target:  5'- gGCCGACGCgucgccgcuuuGCgaguagccgccgUGCGCGAUGUucGUCGCa -3'
miRNA:   3'- gCGGCUGCG-----------UG------------ACGCGCUGUA--CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 55915 0.69 0.382736
Target:  5'- gGCCGACcaACUGCGUGcGCAgGCgGCg -3'
miRNA:   3'- gCGGCUGcgUGACGCGC-UGUaCGgCG- -5'
22686 3' -59.1 NC_005091.1 + 35661 0.7 0.341299
Target:  5'- aGCCGACuCGCgUGCGCGG-AUGCCccgGCu -3'
miRNA:   3'- gCGGCUGcGUG-ACGCGCUgUACGG---CG- -5'
22686 3' -59.1 NC_005091.1 + 57856 0.7 0.341299
Target:  5'- gGUCGaucaGCGCGCaG-GCGACAaGCCGCg -3'
miRNA:   3'- gCGGC----UGCGUGaCgCGCUGUaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 24348 0.7 0.341299
Target:  5'- cCGCCGAUcuucugGUACUuCGCGAuCGUGUCGUa -3'
miRNA:   3'- -GCGGCUG------CGUGAcGCGCU-GUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 34312 0.69 0.356656
Target:  5'- uCGCCGggguGCGCGacCUGaauccaguagcccUGCGGCcgGCCGCg -3'
miRNA:   3'- -GCGGC----UGCGU--GAC-------------GCGCUGuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 11956 0.69 0.357477
Target:  5'- aGCCGuCGUcCUGCGUGACggugacGUGCuCGUg -3'
miRNA:   3'- gCGGCuGCGuGACGCGCUG------UACG-GCG- -5'
22686 3' -59.1 NC_005091.1 + 14497 0.69 0.357477
Target:  5'- uGCUGaACGuCGgUGCGCcgguaaGCGUGCCGCu -3'
miRNA:   3'- gCGGC-UGC-GUgACGCGc-----UGUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 45228 0.69 0.357477
Target:  5'- aCGCuCGGCGCuCUGuCGUcuACcgGCCGCg -3'
miRNA:   3'- -GCG-GCUGCGuGAC-GCGc-UGuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 6598 0.69 0.382736
Target:  5'- aGUCGAUGauCGCUcGCGCGGCGUccggGCUGCc -3'
miRNA:   3'- gCGGCUGC--GUGA-CGCGCUGUA----CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 34846 0.78 0.093604
Target:  5'- uCGCCGACGCGCgcgGcCGgGACAUGgCCGa -3'
miRNA:   3'- -GCGGCUGCGUGa--C-GCgCUGUAC-GGCg -5'
22686 3' -59.1 NC_005091.1 + 23501 0.66 0.556072
Target:  5'- uGgCGACGCGC-GCgGCGAUGgcGCUGCu -3'
miRNA:   3'- gCgGCUGCGUGaCG-CGCUGUa-CGGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.