Results 61 - 80 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22686 | 3' | -59.1 | NC_005091.1 | + | 680 | 0.69 | 0.391415 |
Target: 5'- aCGCgGACuGCGCcGCGCGAau--CCGCa -3' miRNA: 3'- -GCGgCUG-CGUGaCGCGCUguacGGCG- -5' |
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22686 | 3' | -59.1 | NC_005091.1 | + | 33973 | 0.69 | 0.391415 |
Target: 5'- cCGCCGACGUACgccuucaGCGCGucCAUGUa-- -3' miRNA: 3'- -GCGGCUGCGUGa------CGCGCu-GUACGgcg -5' |
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22686 | 3' | -59.1 | NC_005091.1 | + | 52124 | 0.69 | 0.391415 |
Target: 5'- uCGCCGGCGCGggGCGCGu--UGCgGa -3' miRNA: 3'- -GCGGCUGCGUgaCGCGCuguACGgCg -5' |
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22686 | 3' | -59.1 | NC_005091.1 | + | 44179 | 0.68 | 0.409154 |
Target: 5'- aCGUCucggauACGCcgUGCGCGACAgUGCCGUa -3' miRNA: 3'- -GCGGc-----UGCGugACGCGCUGU-ACGGCG- -5' |
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22686 | 3' | -59.1 | NC_005091.1 | + | 462 | 0.68 | 0.41821 |
Target: 5'- gGUCGaucaGCGCGCaG-GCGACAaGCCGCc -3' miRNA: 3'- gCGGC----UGCGUGaCgCGCUGUaCGGCG- -5' |
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22686 | 3' | -59.1 | NC_005091.1 | + | 1379 | 0.68 | 0.421866 |
Target: 5'- aGCgCGAcguguuccuccuguuCGCGCcgaUGgGCGGCAUGCCGa -3' miRNA: 3'- gCG-GCU---------------GCGUG---ACgCGCUGUACGGCg -5' |
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22686 | 3' | -59.1 | NC_005091.1 | + | 49043 | 0.68 | 0.43668 |
Target: 5'- uGCgGGCGCGCUGCuGCGcacCGUG-UGCg -3' miRNA: 3'- gCGgCUGCGUGACG-CGCu--GUACgGCG- -5' |
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22686 | 3' | -59.1 | NC_005091.1 | + | 23389 | 0.68 | 0.44043 |
Target: 5'- aGCCGACGCAgCgccGCcgaacagaccgagcaGCGcCAUcGCCGCg -3' miRNA: 3'- gCGGCUGCGU-Ga--CG---------------CGCuGUA-CGGCG- -5' |
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22686 | 3' | -59.1 | NC_005091.1 | + | 20265 | 0.69 | 0.382736 |
Target: 5'- gGCCGACGCgucgccgcuuuGCgaguagccgccgUGCGCGAUGUucGUCGCa -3' miRNA: 3'- gCGGCUGCG-----------UG------------ACGCGCUGUA--CGGCG- -5' |
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22686 | 3' | -59.1 | NC_005091.1 | + | 55915 | 0.69 | 0.382736 |
Target: 5'- gGCCGACcaACUGCGUGcGCAgGCgGCg -3' miRNA: 3'- gCGGCUGcgUGACGCGC-UGUaCGgCG- -5' |
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22686 | 3' | -59.1 | NC_005091.1 | + | 35661 | 0.7 | 0.341299 |
Target: 5'- aGCCGACuCGCgUGCGCGG-AUGCCccgGCu -3' miRNA: 3'- gCGGCUGcGUG-ACGCGCUgUACGG---CG- -5' |
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22686 | 3' | -59.1 | NC_005091.1 | + | 57856 | 0.7 | 0.341299 |
Target: 5'- gGUCGaucaGCGCGCaG-GCGACAaGCCGCg -3' miRNA: 3'- gCGGC----UGCGUGaCgCGCUGUaCGGCG- -5' |
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22686 | 3' | -59.1 | NC_005091.1 | + | 24348 | 0.7 | 0.341299 |
Target: 5'- cCGCCGAUcuucugGUACUuCGCGAuCGUGUCGUa -3' miRNA: 3'- -GCGGCUG------CGUGAcGCGCU-GUACGGCG- -5' |
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22686 | 3' | -59.1 | NC_005091.1 | + | 34312 | 0.69 | 0.356656 |
Target: 5'- uCGCCGggguGCGCGacCUGaauccaguagcccUGCGGCcgGCCGCg -3' miRNA: 3'- -GCGGC----UGCGU--GAC-------------GCGCUGuaCGGCG- -5' |
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22686 | 3' | -59.1 | NC_005091.1 | + | 11956 | 0.69 | 0.357477 |
Target: 5'- aGCCGuCGUcCUGCGUGACggugacGUGCuCGUg -3' miRNA: 3'- gCGGCuGCGuGACGCGCUG------UACG-GCG- -5' |
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22686 | 3' | -59.1 | NC_005091.1 | + | 14497 | 0.69 | 0.357477 |
Target: 5'- uGCUGaACGuCGgUGCGCcgguaaGCGUGCCGCu -3' miRNA: 3'- gCGGC-UGC-GUgACGCGc-----UGUACGGCG- -5' |
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22686 | 3' | -59.1 | NC_005091.1 | + | 45228 | 0.69 | 0.357477 |
Target: 5'- aCGCuCGGCGCuCUGuCGUcuACcgGCCGCg -3' miRNA: 3'- -GCG-GCUGCGuGAC-GCGc-UGuaCGGCG- -5' |
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22686 | 3' | -59.1 | NC_005091.1 | + | 6598 | 0.69 | 0.382736 |
Target: 5'- aGUCGAUGauCGCUcGCGCGGCGUccggGCUGCc -3' miRNA: 3'- gCGGCUGC--GUGA-CGCGCUGUA----CGGCG- -5' |
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22686 | 3' | -59.1 | NC_005091.1 | + | 34846 | 0.78 | 0.093604 |
Target: 5'- uCGCCGACGCGCgcgGcCGgGACAUGgCCGa -3' miRNA: 3'- -GCGGCUGCGUGa--C-GCgCUGUAC-GGCg -5' |
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22686 | 3' | -59.1 | NC_005091.1 | + | 23501 | 0.66 | 0.556072 |
Target: 5'- uGgCGACGCGC-GCgGCGAUGgcGCUGCu -3' miRNA: 3'- gCgGCUGCGUGaCG-CGCUGUa-CGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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