miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22686 3' -59.1 NC_005091.1 + 42075 0.67 0.455611
Target:  5'- uGCUucuGCGCACcugaagcgUGCcacgGCGACGUGCUGCu -3'
miRNA:   3'- gCGGc--UGCGUG--------ACG----CGCUGUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 3471 0.67 0.507792
Target:  5'- uCGCCGACccacuucaacugauuGCAgaGCgacacgaGCGGCAUGCCu- -3'
miRNA:   3'- -GCGGCUG---------------CGUgaCG-------CGCUGUACGGcg -5'
22686 3' -59.1 NC_005091.1 + 41959 0.66 0.556072
Target:  5'- uGCCGACGUGCgGCcuCGACAUuuacucGgCGCa -3'
miRNA:   3'- gCGGCUGCGUGaCGc-GCUGUA------CgGCG- -5'
22686 3' -59.1 NC_005091.1 + 4736 0.67 0.455611
Target:  5'- --aCGACGCgcggaGCUGCGCGA--UGCUGUc -3'
miRNA:   3'- gcgGCUGCG-----UGACGCGCUguACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 23501 0.66 0.556072
Target:  5'- uGgCGACGCGC-GCgGCGAUGgcGCUGCu -3'
miRNA:   3'- gCgGCUGCGUGaCG-CGCUGUa-CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 46260 0.7 0.333411
Target:  5'- gGCCGuCGUACUGgugaaacaGCGcCAUGCCGa -3'
miRNA:   3'- gCGGCuGCGUGACg-------CGCuGUACGGCg -5'
22686 3' -59.1 NC_005091.1 + 16308 0.66 0.552945
Target:  5'- uGCCGGCgGC-CUcgucccugauccggGCGCGACGgcgGgCGCg -3'
miRNA:   3'- gCGGCUG-CGuGA--------------CGCGCUGUa--CgGCG- -5'
22686 3' -59.1 NC_005091.1 + 49358 0.69 0.349321
Target:  5'- aCGcCCGACGaACUGCGCcuCGUGUgGCu -3'
miRNA:   3'- -GC-GGCUGCgUGACGCGcuGUACGgCG- -5'
22686 3' -59.1 NC_005091.1 + 56949 0.69 0.374186
Target:  5'- --gCGACGCAgaGCG-GGCcgGCCGUg -3'
miRNA:   3'- gcgGCUGCGUgaCGCgCUGuaCGGCG- -5'
22686 3' -59.1 NC_005091.1 + 50060 0.69 0.391415
Target:  5'- aGCCGACGaauCgaGCGCaacGCGUGCCGg -3'
miRNA:   3'- gCGGCUGCgu-Ga-CGCGc--UGUACGGCg -5'
22686 3' -59.1 NC_005091.1 + 48763 0.68 0.409154
Target:  5'- gGCCGuGCGCACgcaUGaCGGCAUGCCuGUa -3'
miRNA:   3'- gCGGC-UGCGUGac-GC-GCUGUACGG-CG- -5'
22686 3' -59.1 NC_005091.1 + 1994 0.68 0.41821
Target:  5'- uCGCCGAgGaC-CUucaaCGCGAUAUGUCGCa -3'
miRNA:   3'- -GCGGCUgC-GuGAc---GCGCUGUACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 55674 0.68 0.446089
Target:  5'- uCGCCGAucgccgccUGCACgaGCGCGugGa-CCGCg -3'
miRNA:   3'- -GCGGCU--------GCGUGa-CGCGCugUacGGCG- -5'
22686 3' -59.1 NC_005091.1 + 23466 0.67 0.465242
Target:  5'- -uUCGGCgGCGCUGCGuCGGCugccccggcUGCCGUa -3'
miRNA:   3'- gcGGCUG-CGUGACGC-GCUGu--------ACGGCG- -5'
22686 3' -59.1 NC_005091.1 + 34545 0.67 0.474976
Target:  5'- uGCCgaGugGgACcGCGCGGCGaaccgGCCGUa -3'
miRNA:   3'- gCGG--CugCgUGaCGCGCUGUa----CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 29361 0.67 0.484812
Target:  5'- aCGCUGcACGCgACggaugGCGCGACGaaGCUGUc -3'
miRNA:   3'- -GCGGC-UGCG-UGa----CGCGCUGUa-CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 21734 0.67 0.494744
Target:  5'- --gCGGCGCAUgGgGCGACGUucgaacgaacgGCCGCc -3'
miRNA:   3'- gcgGCUGCGUGaCgCGCUGUA-----------CGGCG- -5'
22686 3' -59.1 NC_005091.1 + 36164 0.66 0.524046
Target:  5'- gCGCCGAaGUcCUGCGCGAgaaaCAUGuuccgaaggcuguCCGCu -3'
miRNA:   3'- -GCGGCUgCGuGACGCGCU----GUAC-------------GGCG- -5'
22686 3' -59.1 NC_005091.1 + 54698 0.66 0.525069
Target:  5'- aGCCuACGCGgacaUGUGCGcCAUGCUGg -3'
miRNA:   3'- gCGGcUGCGUg---ACGCGCuGUACGGCg -5'
22686 3' -59.1 NC_005091.1 + 499 0.66 0.529167
Target:  5'- gCGCCGuCGCG-UGCGUGAgaaccgcgcgcucucCccGCCGCu -3'
miRNA:   3'- -GCGGCuGCGUgACGCGCU---------------GuaCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.