miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22687 5' -55.5 NC_005091.1 + 33471 0.66 0.737401
Target:  5'- cGCCGAgGCGCG-CGaUUUC-GCGCu -3'
miRNA:   3'- aCGGCUgCGCGCaGUaGAAGaCGUGc -5'
22687 5' -55.5 NC_005091.1 + 42655 0.66 0.737401
Target:  5'- gUGCgCGGCGCGgacaagCGUCUUCUcggcgaGCGCGa -3'
miRNA:   3'- -ACG-GCUGCGCgca---GUAGAAGA------CGUGC- -5'
22687 5' -55.5 NC_005091.1 + 3315 0.66 0.716314
Target:  5'- aGCUG-CGCGCGaUUGUCgaagGCACGg -3'
miRNA:   3'- aCGGCuGCGCGC-AGUAGaagaCGUGC- -5'
22687 5' -55.5 NC_005091.1 + 9223 0.66 0.716314
Target:  5'- -uUCGGCGUGCGaCAUCgccaUCUGgACGa -3'
miRNA:   3'- acGGCUGCGCGCaGUAGa---AGACgUGC- -5'
22687 5' -55.5 NC_005091.1 + 18959 0.66 0.69382
Target:  5'- gUGCCGGCGUuccgggGCGUCuucacgguGUUUuucgacggccucaUCUGCGCGa -3'
miRNA:   3'- -ACGGCUGCG------CGCAG--------UAGA-------------AGACGUGC- -5'
22687 5' -55.5 NC_005091.1 + 16019 0.67 0.673242
Target:  5'- gGCCGACaaGCGUCGUg--CUGC-CGc -3'
miRNA:   3'- aCGGCUGcgCGCAGUAgaaGACGuGC- -5'
22687 5' -55.5 NC_005091.1 + 25870 0.67 0.673242
Target:  5'- aUGCCGAgGCGU-UCggCUUgcgcCUGCACGu -3'
miRNA:   3'- -ACGGCUgCGCGcAGuaGAA----GACGUGC- -5'
22687 5' -55.5 NC_005091.1 + 10159 0.67 0.669978
Target:  5'- cGCCGcacguuccugauguGCGCGUGUCcugc-CUGCGCGa -3'
miRNA:   3'- aCGGC--------------UGCGCGCAGuagaaGACGUGC- -5'
22687 5' -55.5 NC_005091.1 + 52761 0.67 0.662351
Target:  5'- gGCCGGCGUGCG-CGcCcgUCUGguCGu -3'
miRNA:   3'- aCGGCUGCGCGCaGUaGa-AGACguGC- -5'
22687 5' -55.5 NC_005091.1 + 36342 0.67 0.662351
Target:  5'- cGUCGugGCgGCGuUCAUC-UCgugGCGCa -3'
miRNA:   3'- aCGGCugCG-CGC-AGUAGaAGa--CGUGc -5'
22687 5' -55.5 NC_005091.1 + 17063 0.67 0.662351
Target:  5'- aUGCCGcUGCGCGUgcUCUcgaccUCgGCGCGa -3'
miRNA:   3'- -ACGGCuGCGCGCAguAGA-----AGaCGUGC- -5'
22687 5' -55.5 NC_005091.1 + 44553 0.67 0.662351
Target:  5'- cGCCGcC-CGCGUCuUCUUCgaGCGCc -3'
miRNA:   3'- aCGGCuGcGCGCAGuAGAAGa-CGUGc -5'
22687 5' -55.5 NC_005091.1 + 9297 0.67 0.651432
Target:  5'- cGCCGGaaacacCGCGCGauUCGggUCgccggCUGCACGg -3'
miRNA:   3'- aCGGCU------GCGCGC--AGU--AGaa---GACGUGC- -5'
22687 5' -55.5 NC_005091.1 + 23035 0.67 0.640496
Target:  5'- cGCCGACGCcauCG-CAUCgg--GCACGa -3'
miRNA:   3'- aCGGCUGCGc--GCaGUAGaagaCGUGC- -5'
22687 5' -55.5 NC_005091.1 + 11389 0.67 0.640496
Target:  5'- cGUCGGC-CGCGUCAcg--CUGCGCu -3'
miRNA:   3'- aCGGCUGcGCGCAGUagaaGACGUGc -5'
22687 5' -55.5 NC_005091.1 + 27897 0.67 0.629552
Target:  5'- uUGCCGucaGCG-GUgAUCUUCgUGUACGg -3'
miRNA:   3'- -ACGGCug-CGCgCAgUAGAAG-ACGUGC- -5'
22687 5' -55.5 NC_005091.1 + 8788 0.68 0.60768
Target:  5'- aUGUCGAuauUGCugGCGUCGUCUUCuacgagUGCACu -3'
miRNA:   3'- -ACGGCU---GCG--CGCAGUAGAAG------ACGUGc -5'
22687 5' -55.5 NC_005091.1 + 5023 0.68 0.604405
Target:  5'- cGCCGcaACGCGUGUCaAUCUaagacgcucaccugUCUGUcauGCGg -3'
miRNA:   3'- aCGGC--UGCGCGCAG-UAGA--------------AGACG---UGC- -5'
22687 5' -55.5 NC_005091.1 + 28342 0.68 0.596771
Target:  5'- aGCCGccaGCGCGUCGcCggUUGCACc -3'
miRNA:   3'- aCGGCug-CGCGCAGUaGaaGACGUGc -5'
22687 5' -55.5 NC_005091.1 + 22249 0.68 0.596771
Target:  5'- aUGCCGACcuGCGCGgauugCUguacgcaCUGCGCGg -3'
miRNA:   3'- -ACGGCUG--CGCGCagua-GAa------GACGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.