miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22688 3' -56.7 NC_005091.1 + 47745 0.66 0.628926
Target:  5'- -cGUCCUaagCGACGCCGgauUUACCUUCc -3'
miRNA:   3'- uuCGGGGcuaGCUGCGGU---AGUGGAAG- -5'
22688 3' -56.7 NC_005091.1 + 25157 0.66 0.628926
Target:  5'- uGGCCgCCGAUCGguugaACGCCG-CGCUUg- -3'
miRNA:   3'- uUCGG-GGCUAGC-----UGCGGUaGUGGAag -5'
22688 3' -56.7 NC_005091.1 + 49145 0.66 0.628926
Target:  5'- -cGUCCCGugugUGACGCCA--GCCUUUu -3'
miRNA:   3'- uuCGGGGCua--GCUGCGGUagUGGAAG- -5'
22688 3' -56.7 NC_005091.1 + 13520 0.66 0.628926
Target:  5'- -cGUCgCUGcUCGACGCCggGUCGCUUUCc -3'
miRNA:   3'- uuCGG-GGCuAGCUGCGG--UAGUGGAAG- -5'
22688 3' -56.7 NC_005091.1 + 52632 0.66 0.617938
Target:  5'- -cGCgCCGAUCccguguGCGCCAUU-CCUUCa -3'
miRNA:   3'- uuCGgGGCUAGc-----UGCGGUAGuGGAAG- -5'
22688 3' -56.7 NC_005091.1 + 13572 0.66 0.606962
Target:  5'- cGGUCUCGG-CGGCGCacCGUCGCCaUUCg -3'
miRNA:   3'- uUCGGGGCUaGCUGCG--GUAGUGG-AAG- -5'
22688 3' -56.7 NC_005091.1 + 3945 0.67 0.5742
Target:  5'- -cGCUCCGAUCGucguCGCCAUCcgggUCg -3'
miRNA:   3'- uuCGGGGCUAGCu---GCGGUAGuggaAG- -5'
22688 3' -56.7 NC_005091.1 + 9964 0.67 0.531214
Target:  5'- cGGCCCCGGcUCGAUcccguccggucaGCCAagCACCUg- -3'
miRNA:   3'- uUCGGGGCU-AGCUG------------CGGUa-GUGGAag -5'
22688 3' -56.7 NC_005091.1 + 19170 0.68 0.510154
Target:  5'- uGGCCCCG-UCGAugaacugguCGCgAUCACCg-- -3'
miRNA:   3'- uUCGGGGCuAGCU---------GCGgUAGUGGaag -5'
22688 3' -56.7 NC_005091.1 + 25410 0.68 0.48945
Target:  5'- gAAGCCCauAUCGGCG--AUCGCCUUCc -3'
miRNA:   3'- -UUCGGGgcUAGCUGCggUAGUGGAAG- -5'
22688 3' -56.7 NC_005091.1 + 44527 0.69 0.45916
Target:  5'- cAGGCC---GUCGcUGCCGUCGCCUUCg -3'
miRNA:   3'- -UUCGGggcUAGCuGCGGUAGUGGAAG- -5'
22688 3' -56.7 NC_005091.1 + 39970 0.69 0.439529
Target:  5'- cAGCCCCu-UCGACGC-GUCGCCg-- -3'
miRNA:   3'- uUCGGGGcuAGCUGCGgUAGUGGaag -5'
22688 3' -56.7 NC_005091.1 + 9110 0.69 0.429896
Target:  5'- -cGCCCCGGUCGAauucccacaCGCCGUagggAgCUUCg -3'
miRNA:   3'- uuCGGGGCUAGCU---------GCGGUAg---UgGAAG- -5'
22688 3' -56.7 NC_005091.1 + 29520 0.69 0.420387
Target:  5'- cAGCUUCGAggUCGuuGCgCGUCGCCUUCu -3'
miRNA:   3'- uUCGGGGCU--AGCugCG-GUAGUGGAAG- -5'
22688 3' -56.7 NC_005091.1 + 24648 0.7 0.401757
Target:  5'- -cGCCCCGAUCGACaCCGcUgACCg-- -3'
miRNA:   3'- uuCGGGGCUAGCUGcGGU-AgUGGaag -5'
22688 3' -56.7 NC_005091.1 + 51451 0.71 0.35755
Target:  5'- cAGCCCCGGUCGuCGCUucCGCCc-- -3'
miRNA:   3'- uUCGGGGCUAGCuGCGGuaGUGGaag -5'
22688 3' -56.7 NC_005091.1 + 41089 0.71 0.349128
Target:  5'- cGGCCCCGGcCGGCGUCuccguuuUCcCCUUCa -3'
miRNA:   3'- uUCGGGGCUaGCUGCGGu------AGuGGAAG- -5'
22688 3' -56.7 NC_005091.1 + 7927 0.72 0.301599
Target:  5'- uGGGCCUgcuUCGAgGUCAUCGCCUUCa -3'
miRNA:   3'- -UUCGGGgcuAGCUgCGGUAGUGGAAG- -5'
22688 3' -56.7 NC_005091.1 + 11641 0.74 0.221827
Target:  5'- cGAGaCCCGAUCGcAUGCCGUCaggaagucgccgGCCUUCa -3'
miRNA:   3'- -UUCgGGGCUAGC-UGCGGUAG------------UGGAAG- -5'
22688 3' -56.7 NC_005091.1 + 1666 0.74 0.216061
Target:  5'- -cGCgCUGAUCGACGCCAUCGuuUUUc -3'
miRNA:   3'- uuCGgGGCUAGCUGCGGUAGUggAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.