Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22688 | 5' | -59.6 | NC_005091.1 | + | 55389 | 0.66 | 0.547522 |
Target: 5'- cGCGGGcggcaaagcuGUCGAUCugGUUGUUgACGGUu -3' miRNA: 3'- -UGCUC----------CGGCUAGugCAGCGGgUGCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 20258 | 0.66 | 0.547522 |
Target: 5'- uCGAaucGGCCGA-CGCGUCGCCgCuuuGCGaGUa -3' miRNA: 3'- uGCU---CCGGCUaGUGCAGCGG-G---UGC-CG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 11387 | 0.66 | 0.547522 |
Target: 5'- gGCGucGGCCGcGUCACGcugCGCUU-CGGCc -3' miRNA: 3'- -UGCu-CCGGC-UAGUGCa--GCGGGuGCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 7468 | 0.66 | 0.545465 |
Target: 5'- gGCGcAGGCCGAgaagacgaagagCACG-CGCUCGCGu- -3' miRNA: 3'- -UGC-UCCGGCUa-----------GUGCaGCGGGUGCcg -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 25005 | 0.66 | 0.537259 |
Target: 5'- uACGAGGCaugGAUCaACGUCaagUACGGCa -3' miRNA: 3'- -UGCUCCGg--CUAG-UGCAGcggGUGCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 22849 | 0.66 | 0.536236 |
Target: 5'- uCGAuGCCGAgcgCACG-CGCCUgaacgccgcgcugACGGCc -3' miRNA: 3'- uGCUcCGGCUa--GUGCaGCGGG-------------UGCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 9948 | 0.66 | 0.527063 |
Target: 5'- uCGAGGauGAucgUCACGUaCGgCCACGGa -3' miRNA: 3'- uGCUCCggCU---AGUGCA-GCgGGUGCCg -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 30984 | 0.66 | 0.526047 |
Target: 5'- gACGuGGCCuGAUCccacgcuGCGcCGCCCgucaguugcACGGUg -3' miRNA: 3'- -UGCuCCGG-CUAG-------UGCaGCGGG---------UGCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 2660 | 0.66 | 0.52098 |
Target: 5'- uGCGAugccaucgagaauuuGGUCGAUCAguucgggGUCGCCCACGu- -3' miRNA: 3'- -UGCU---------------CCGGCUAGUg------CAGCGGGUGCcg -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 23524 | 0.66 | 0.51694 |
Target: 5'- gGCGAGcGUCaucaugcaGAUCAUGgcgaCGCgCGCGGCg -3' miRNA: 3'- -UGCUC-CGG--------CUAGUGCa---GCGgGUGCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 34421 | 0.66 | 0.51694 |
Target: 5'- gGCGGucGGUCGAUaccaucuggaagCAgGUCGCgUACGGCc -3' miRNA: 3'- -UGCU--CCGGCUA------------GUgCAGCGgGUGCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 1827 | 0.66 | 0.51694 |
Target: 5'- gAUGAGGUCGAccgUCGCGacgugcuccuUCGCUU-CGGCa -3' miRNA: 3'- -UGCUCCGGCU---AGUGC----------AGCGGGuGCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 9448 | 0.66 | 0.506896 |
Target: 5'- cACGAc-CCGuGUUACGUCGUCCaguACGGCg -3' miRNA: 3'- -UGCUccGGC-UAGUGCAGCGGG---UGCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 9116 | 0.66 | 0.506896 |
Target: 5'- cCGAuGuGCCGAgaaugUAUGUCGUCCAgaUGGCg -3' miRNA: 3'- uGCU-C-CGGCUa----GUGCAGCGGGU--GCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 26702 | 0.66 | 0.496936 |
Target: 5'- cGCGAuGGCCGcgCccucgACGgacCGCUUAUGGCg -3' miRNA: 3'- -UGCU-CCGGCuaG-----UGCa--GCGGGUGCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 16770 | 0.66 | 0.496936 |
Target: 5'- cGCGGGGgacuuaccgaCGAUauaGCGaUCGCCCuCGGCc -3' miRNA: 3'- -UGCUCCg---------GCUAg--UGC-AGCGGGuGCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 33504 | 0.66 | 0.496936 |
Target: 5'- -aGAGGCCGGcaUCGaucCGCaUCACGGCu -3' miRNA: 3'- ugCUCCGGCU--AGUgcaGCG-GGUGCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 21638 | 0.66 | 0.496936 |
Target: 5'- gGCGGgcGGCCGuucguUCgaACGUCGCcCCAUGcGCc -3' miRNA: 3'- -UGCU--CCGGCu----AG--UGCAGCG-GGUGC-CG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 32599 | 0.67 | 0.487065 |
Target: 5'- uACGAGGCgu-UCACGUCGgCCUgaauGCuGGCc -3' miRNA: 3'- -UGCUCCGgcuAGUGCAGC-GGG----UG-CCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 9554 | 0.67 | 0.487065 |
Target: 5'- gACGAGGCUGccGUguCGgcaGCCaucaACGGCg -3' miRNA: 3'- -UGCUCCGGC--UAguGCag-CGGg---UGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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