Results 41 - 53 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
22688 | 5' | -59.6 | NC_005091.1 | + | 30137 | 0.7 | 0.328554 |
Target: 5'- cCGAGGCCGA-CGCuuUCGCgCGgGGCu -3' miRNA: 3'- uGCUCCGGCUaGUGc-AGCGgGUgCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 15252 | 0.71 | 0.25842 |
Target: 5'- cACGcGGCCGGUCuCGUC-CCCgauccgggcgcaACGGCg -3' miRNA: 3'- -UGCuCCGGCUAGuGCAGcGGG------------UGCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 36715 | 0.71 | 0.282156 |
Target: 5'- cGCGAGGUCGAacggcUCGcCGUCGCCaucaacgucgucCGGCa -3' miRNA: 3'- -UGCUCCGGCU-----AGU-GCAGCGGgu----------GCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 12587 | 0.72 | 0.222515 |
Target: 5'- uGCGuGGCCGAuUCGCG-CGCCCGgucuCGGa -3' miRNA: 3'- -UGCuCCGGCU-AGUGCaGCGGGU----GCCg -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 56 | 0.72 | 0.245952 |
Target: 5'- cAUGGGGCUGAUUuccauucaagGCGU-GCgCCACGGCu -3' miRNA: 3'- -UGCUCCGGCUAG----------UGCAgCG-GGUGCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 17148 | 0.72 | 0.22819 |
Target: 5'- cCGAGGUCGAgagCACG-CGCa-GCGGCa -3' miRNA: 3'- uGCUCCGGCUa--GUGCaGCGggUGCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 57450 | 0.72 | 0.245952 |
Target: 5'- cAUGGGGCUGAUUuccauucaagGCGU-GCgCCACGGCu -3' miRNA: 3'- -UGCUCCGGCUAG----------UGCAgCG-GGUGCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 37242 | 0.73 | 0.195919 |
Target: 5'- gGCGAGGUCGAUgACcaUCGCCC-CGaGCg -3' miRNA: 3'- -UGCUCCGGCUAgUGc-AGCGGGuGC-CG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 29525 | 0.75 | 0.159143 |
Target: 5'- uCGAGGUCGuugCGCGUCGCCUucuUGGUa -3' miRNA: 3'- uGCUCCGGCua-GUGCAGCGGGu--GCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 6299 | 0.75 | 0.147036 |
Target: 5'- uCGAGGCCGAUUACGUCGaaauaCUCGUGGUg -3' miRNA: 3'- uGCUCCGGCUAGUGCAGC-----GGGUGCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 26120 | 0.77 | 0.103741 |
Target: 5'- gGCGA-GCUGAUCGCGcUCGCC-ACGGCg -3' miRNA: 3'- -UGCUcCGGCUAGUGC-AGCGGgUGCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 41967 | 0.79 | 0.07892 |
Target: 5'- cGCGAGGUCGAgcagCACGUCGCCgu-GGCa -3' miRNA: 3'- -UGCUCCGGCUa---GUGCAGCGGgugCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 25245 | 1.11 | 0.000333 |
Target: 5'- cACGAGGCCGAUCACGUCGCCCACGGCg -3' miRNA: 3'- -UGCUCCGGCUAGUGCAGCGGGUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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