miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22688 5' -59.6 NC_005091.1 + 25245 1.11 0.000333
Target:  5'- cACGAGGCCGAUCACGUCGCCCACGGCg -3'
miRNA:   3'- -UGCUCCGGCUAGUGCAGCGGGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 41967 0.79 0.07892
Target:  5'- cGCGAGGUCGAgcagCACGUCGCCgu-GGCa -3'
miRNA:   3'- -UGCUCCGGCUa---GUGCAGCGGgugCCG- -5'
22688 5' -59.6 NC_005091.1 + 26120 0.77 0.103741
Target:  5'- gGCGA-GCUGAUCGCGcUCGCC-ACGGCg -3'
miRNA:   3'- -UGCUcCGGCUAGUGC-AGCGGgUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 6299 0.75 0.147036
Target:  5'- uCGAGGCCGAUUACGUCGaaauaCUCGUGGUg -3'
miRNA:   3'- uGCUCCGGCUAGUGCAGC-----GGGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 29525 0.75 0.159143
Target:  5'- uCGAGGUCGuugCGCGUCGCCUucuUGGUa -3'
miRNA:   3'- uGCUCCGGCua-GUGCAGCGGGu--GCCG- -5'
22688 5' -59.6 NC_005091.1 + 37242 0.73 0.195919
Target:  5'- gGCGAGGUCGAUgACcaUCGCCC-CGaGCg -3'
miRNA:   3'- -UGCUCCGGCUAgUGc-AGCGGGuGC-CG- -5'
22688 5' -59.6 NC_005091.1 + 12587 0.72 0.222515
Target:  5'- uGCGuGGCCGAuUCGCG-CGCCCGgucuCGGa -3'
miRNA:   3'- -UGCuCCGGCU-AGUGCaGCGGGU----GCCg -5'
22688 5' -59.6 NC_005091.1 + 17148 0.72 0.22819
Target:  5'- cCGAGGUCGAgagCACG-CGCa-GCGGCa -3'
miRNA:   3'- uGCUCCGGCUa--GUGCaGCGggUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 56 0.72 0.245952
Target:  5'- cAUGGGGCUGAUUuccauucaagGCGU-GCgCCACGGCu -3'
miRNA:   3'- -UGCUCCGGCUAG----------UGCAgCG-GGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 57450 0.72 0.245952
Target:  5'- cAUGGGGCUGAUUuccauucaagGCGU-GCgCCACGGCu -3'
miRNA:   3'- -UGCUCCGGCUAG----------UGCAgCG-GGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 15252 0.71 0.25842
Target:  5'- cACGcGGCCGGUCuCGUC-CCCgauccgggcgcaACGGCg -3'
miRNA:   3'- -UGCuCCGGCUAGuGCAGcGGG------------UGCCG- -5'
22688 5' -59.6 NC_005091.1 + 36715 0.71 0.282156
Target:  5'- cGCGAGGUCGAacggcUCGcCGUCGCCaucaacgucgucCGGCa -3'
miRNA:   3'- -UGCUCCGGCU-----AGU-GCAGCGGgu----------GCCG- -5'
22688 5' -59.6 NC_005091.1 + 42121 0.7 0.313472
Target:  5'- ---cGGCCGAUCACaaacggGUUGCCCcacaccgaaggGCGGCc -3'
miRNA:   3'- ugcuCCGGCUAGUG------CAGCGGG-----------UGCCG- -5'
22688 5' -59.6 NC_005091.1 + 40175 0.7 0.313472
Target:  5'- uACGAGaaaCCGAUCuucuCGUaCGUCUGCGGCg -3'
miRNA:   3'- -UGCUCc--GGCUAGu---GCA-GCGGGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 30137 0.7 0.328554
Target:  5'- cCGAGGCCGA-CGCuuUCGCgCGgGGCu -3'
miRNA:   3'- uGCUCCGGCUaGUGc-AGCGgGUgCCG- -5'
22688 5' -59.6 NC_005091.1 + 15919 0.7 0.328554
Target:  5'- cGCGAuaccGGCCGuaaccGUCugGUucguccacuuggCGCUCGCGGCg -3'
miRNA:   3'- -UGCU----CCGGC-----UAGugCA------------GCGGGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 28941 0.69 0.339427
Target:  5'- cACGAGGCCguGAUCGgguCGUUGCgcuucgaggaucgaCACGGCa -3'
miRNA:   3'- -UGCUCCGG--CUAGU---GCAGCGg-------------GUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 53074 0.69 0.352169
Target:  5'- gACGuGcGCCGGUCAUGgugcgggguUCGCUgauCGCGGCg -3'
miRNA:   3'- -UGCuC-CGGCUAGUGC---------AGCGG---GUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 52185 0.69 0.368568
Target:  5'- gGCGAcGGCCGccuuuUCACGgcauacggccgCGCCaauGCGGCg -3'
miRNA:   3'- -UGCU-CCGGCu----AGUGCa----------GCGGg--UGCCG- -5'
22688 5' -59.6 NC_005091.1 + 54926 0.68 0.402903
Target:  5'- uGCGgggauuuuGGGCUGAUgGCGcCGCCCggACGGg -3'
miRNA:   3'- -UGC--------UCCGGCUAgUGCaGCGGG--UGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.