miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22688 5' -59.6 NC_005091.1 + 32123 0.68 0.411799
Target:  5'- aACGu-GCUGcUCGCGUCGCUCGCcaaGGCg -3'
miRNA:   3'- -UGCucCGGCuAGUGCAGCGGGUG---CCG- -5'
22688 5' -59.6 NC_005091.1 + 4182 0.68 0.418097
Target:  5'- -aGAuGGCCGAgcggauguccaaggUCcuguCGUUGCCCGgCGGCg -3'
miRNA:   3'- ugCU-CCGGCU--------------AGu---GCAGCGGGU-GCCG- -5'
22688 5' -59.6 NC_005091.1 + 3924 0.68 0.429948
Target:  5'- cGCGAGGCau-UCGCGcUUGCUCucgaaGCGGCc -3'
miRNA:   3'- -UGCUCCGgcuAGUGC-AGCGGG-----UGCCG- -5'
22688 5' -59.6 NC_005091.1 + 20331 0.68 0.429948
Target:  5'- cGCGucGGCCGAuucgaUCACGcUCGaCUgCGCGGCu -3'
miRNA:   3'- -UGCu-CCGGCU-----AGUGC-AGC-GG-GUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 35655 0.67 0.447619
Target:  5'- cCGGGuaGCCGAcUCGCGUgcgcggaUGCCC-CGGCu -3'
miRNA:   3'- uGCUC--CGGCU-AGUGCA-------GCGGGuGCCG- -5'
22688 5' -59.6 NC_005091.1 + 44284 0.67 0.44856
Target:  5'- gGCGAagacGCCGcauacggCACuGUCGCgCACGGCg -3'
miRNA:   3'- -UGCUc---CGGCua-----GUG-CAGCGgGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 48637 0.67 0.44856
Target:  5'- cGCGcAGGcCCGAUgAgGaUCGCUCGgGGCg -3'
miRNA:   3'- -UGC-UCC-GGCUAgUgC-AGCGGGUgCCG- -5'
22688 5' -59.6 NC_005091.1 + 13132 0.67 0.44856
Target:  5'- gACGGGGCCGuauggCugGUC-CCCAaagauagcuCGGUc -3'
miRNA:   3'- -UGCUCCGGCua---GugCAGcGGGU---------GCCG- -5'
22688 5' -59.6 NC_005091.1 + 52792 0.67 0.44856
Target:  5'- gACGcGGCggCGAUCAgGcCGCaCGCGGCa -3'
miRNA:   3'- -UGCuCCG--GCUAGUgCaGCGgGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 16017 0.67 0.458031
Target:  5'- --cAGGCCGAcaaGCGUCgugcugccgccgGCCgGCGGCa -3'
miRNA:   3'- ugcUCCGGCUag-UGCAG------------CGGgUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 23360 0.67 0.458031
Target:  5'- cCGAGGCCGGUUccuACGgcaGCCgG-GGCa -3'
miRNA:   3'- uGCUCCGGCUAG---UGCag-CGGgUgCCG- -5'
22688 5' -59.6 NC_005091.1 + 33215 0.67 0.458031
Target:  5'- uACGAGGCCGGcguaaugCGCGgcgaccaucUGCCCGC-GCa -3'
miRNA:   3'- -UGCUCCGGCUa------GUGCa--------GCGGGUGcCG- -5'
22688 5' -59.6 NC_005091.1 + 51161 0.67 0.467608
Target:  5'- gGCGAuugacGGCCGuuccAUCAaugaaaaUCGCCCACGGg -3'
miRNA:   3'- -UGCU-----CCGGC----UAGUgc-----AGCGGGUGCCg -5'
22688 5' -59.6 NC_005091.1 + 9554 0.67 0.487065
Target:  5'- gACGAGGCUGccGUguCGgcaGCCaucaACGGCg -3'
miRNA:   3'- -UGCUCCGGC--UAguGCag-CGGg---UGCCG- -5'
22688 5' -59.6 NC_005091.1 + 32599 0.67 0.487065
Target:  5'- uACGAGGCgu-UCACGUCGgCCUgaauGCuGGCc -3'
miRNA:   3'- -UGCUCCGgcuAGUGCAGC-GGG----UG-CCG- -5'
22688 5' -59.6 NC_005091.1 + 16770 0.66 0.496936
Target:  5'- cGCGGGGgacuuaccgaCGAUauaGCGaUCGCCCuCGGCc -3'
miRNA:   3'- -UGCUCCg---------GCUAg--UGC-AGCGGGuGCCG- -5'
22688 5' -59.6 NC_005091.1 + 33504 0.66 0.496936
Target:  5'- -aGAGGCCGGcaUCGaucCGCaUCACGGCu -3'
miRNA:   3'- ugCUCCGGCU--AGUgcaGCG-GGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 21638 0.66 0.496936
Target:  5'- gGCGGgcGGCCGuucguUCgaACGUCGCcCCAUGcGCc -3'
miRNA:   3'- -UGCU--CCGGCu----AG--UGCAGCG-GGUGC-CG- -5'
22688 5' -59.6 NC_005091.1 + 26702 0.66 0.496936
Target:  5'- cGCGAuGGCCGcgCccucgACGgacCGCUUAUGGCg -3'
miRNA:   3'- -UGCU-CCGGCuaG-----UGCa--GCGGGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 9448 0.66 0.506896
Target:  5'- cACGAc-CCGuGUUACGUCGUCCaguACGGCg -3'
miRNA:   3'- -UGCUccGGC-UAGUGCAGCGGG---UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.