miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22688 5' -59.6 NC_005091.1 + 56 0.72 0.245952
Target:  5'- cAUGGGGCUGAUUuccauucaagGCGU-GCgCCACGGCu -3'
miRNA:   3'- -UGCUCCGGCUAG----------UGCAgCG-GGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 1827 0.66 0.51694
Target:  5'- gAUGAGGUCGAccgUCGCGacgugcuccuUCGCUU-CGGCa -3'
miRNA:   3'- -UGCUCCGGCU---AGUGC----------AGCGGGuGCCG- -5'
22688 5' -59.6 NC_005091.1 + 2660 0.66 0.52098
Target:  5'- uGCGAugccaucgagaauuuGGUCGAUCAguucgggGUCGCCCACGu- -3'
miRNA:   3'- -UGCU---------------CCGGCUAGUg------CAGCGGGUGCcg -5'
22688 5' -59.6 NC_005091.1 + 3924 0.68 0.429948
Target:  5'- cGCGAGGCau-UCGCGcUUGCUCucgaaGCGGCc -3'
miRNA:   3'- -UGCUCCGgcuAGUGC-AGCGGG-----UGCCG- -5'
22688 5' -59.6 NC_005091.1 + 4182 0.68 0.418097
Target:  5'- -aGAuGGCCGAgcggauguccaaggUCcuguCGUUGCCCGgCGGCg -3'
miRNA:   3'- ugCU-CCGGCU--------------AGu---GCAGCGGGU-GCCG- -5'
22688 5' -59.6 NC_005091.1 + 6299 0.75 0.147036
Target:  5'- uCGAGGCCGAUUACGUCGaaauaCUCGUGGUg -3'
miRNA:   3'- uGCUCCGGCUAGUGCAGC-----GGGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 7468 0.66 0.545465
Target:  5'- gGCGcAGGCCGAgaagacgaagagCACG-CGCUCGCGu- -3'
miRNA:   3'- -UGC-UCCGGCUa-----------GUGCaGCGGGUGCcg -5'
22688 5' -59.6 NC_005091.1 + 9116 0.66 0.506896
Target:  5'- cCGAuGuGCCGAgaaugUAUGUCGUCCAgaUGGCg -3'
miRNA:   3'- uGCU-C-CGGCUa----GUGCAGCGGGU--GCCG- -5'
22688 5' -59.6 NC_005091.1 + 9448 0.66 0.506896
Target:  5'- cACGAc-CCGuGUUACGUCGUCCaguACGGCg -3'
miRNA:   3'- -UGCUccGGC-UAGUGCAGCGGG---UGCCG- -5'
22688 5' -59.6 NC_005091.1 + 9554 0.67 0.487065
Target:  5'- gACGAGGCUGccGUguCGgcaGCCaucaACGGCg -3'
miRNA:   3'- -UGCUCCGGC--UAguGCag-CGGg---UGCCG- -5'
22688 5' -59.6 NC_005091.1 + 9948 0.66 0.527063
Target:  5'- uCGAGGauGAucgUCACGUaCGgCCACGGa -3'
miRNA:   3'- uGCUCCggCU---AGUGCA-GCgGGUGCCg -5'
22688 5' -59.6 NC_005091.1 + 11387 0.66 0.547522
Target:  5'- gGCGucGGCCGcGUCACGcugCGCUU-CGGCc -3'
miRNA:   3'- -UGCu-CCGGC-UAGUGCa--GCGGGuGCCG- -5'
22688 5' -59.6 NC_005091.1 + 12587 0.72 0.222515
Target:  5'- uGCGuGGCCGAuUCGCG-CGCCCGgucuCGGa -3'
miRNA:   3'- -UGCuCCGGCU-AGUGCaGCGGGU----GCCg -5'
22688 5' -59.6 NC_005091.1 + 13132 0.67 0.44856
Target:  5'- gACGGGGCCGuauggCugGUC-CCCAaagauagcuCGGUc -3'
miRNA:   3'- -UGCUCCGGCua---GugCAGcGGGU---------GCCG- -5'
22688 5' -59.6 NC_005091.1 + 15252 0.71 0.25842
Target:  5'- cACGcGGCCGGUCuCGUC-CCCgauccgggcgcaACGGCg -3'
miRNA:   3'- -UGCuCCGGCUAGuGCAGcGGG------------UGCCG- -5'
22688 5' -59.6 NC_005091.1 + 15919 0.7 0.328554
Target:  5'- cGCGAuaccGGCCGuaaccGUCugGUucguccacuuggCGCUCGCGGCg -3'
miRNA:   3'- -UGCU----CCGGC-----UAGugCA------------GCGGGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 16017 0.67 0.458031
Target:  5'- --cAGGCCGAcaaGCGUCgugcugccgccgGCCgGCGGCa -3'
miRNA:   3'- ugcUCCGGCUag-UGCAG------------CGGgUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 16770 0.66 0.496936
Target:  5'- cGCGGGGgacuuaccgaCGAUauaGCGaUCGCCCuCGGCc -3'
miRNA:   3'- -UGCUCCg---------GCUAg--UGC-AGCGGGuGCCG- -5'
22688 5' -59.6 NC_005091.1 + 17148 0.72 0.22819
Target:  5'- cCGAGGUCGAgagCACG-CGCa-GCGGCa -3'
miRNA:   3'- uGCUCCGGCUa--GUGCaGCGggUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 20258 0.66 0.547522
Target:  5'- uCGAaucGGCCGA-CGCGUCGCCgCuuuGCGaGUa -3'
miRNA:   3'- uGCU---CCGGCUaGUGCAGCGG-G---UGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.