miRNA display CGI


Results 41 - 53 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22688 5' -59.6 NC_005091.1 + 37242 0.73 0.195919
Target:  5'- gGCGAGGUCGAUgACcaUCGCCC-CGaGCg -3'
miRNA:   3'- -UGCUCCGGCUAgUGc-AGCGGGuGC-CG- -5'
22688 5' -59.6 NC_005091.1 + 40175 0.7 0.313472
Target:  5'- uACGAGaaaCCGAUCuucuCGUaCGUCUGCGGCg -3'
miRNA:   3'- -UGCUCc--GGCUAGu---GCA-GCGGGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 41967 0.79 0.07892
Target:  5'- cGCGAGGUCGAgcagCACGUCGCCgu-GGCa -3'
miRNA:   3'- -UGCUCCGGCUa---GUGCAGCGGgugCCG- -5'
22688 5' -59.6 NC_005091.1 + 42121 0.7 0.313472
Target:  5'- ---cGGCCGAUCACaaacggGUUGCCCcacaccgaaggGCGGCc -3'
miRNA:   3'- ugcuCCGGCUAGUG------CAGCGGG-----------UGCCG- -5'
22688 5' -59.6 NC_005091.1 + 44284 0.67 0.44856
Target:  5'- gGCGAagacGCCGcauacggCACuGUCGCgCACGGCg -3'
miRNA:   3'- -UGCUc---CGGCua-----GUG-CAGCGgGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 48637 0.67 0.44856
Target:  5'- cGCGcAGGcCCGAUgAgGaUCGCUCGgGGCg -3'
miRNA:   3'- -UGC-UCC-GGCUAgUgC-AGCGGGUgCCG- -5'
22688 5' -59.6 NC_005091.1 + 51161 0.67 0.467608
Target:  5'- gGCGAuugacGGCCGuuccAUCAaugaaaaUCGCCCACGGg -3'
miRNA:   3'- -UGCU-----CCGGC----UAGUgc-----AGCGGGUGCCg -5'
22688 5' -59.6 NC_005091.1 + 52185 0.69 0.368568
Target:  5'- gGCGAcGGCCGccuuuUCACGgcauacggccgCGCCaauGCGGCg -3'
miRNA:   3'- -UGCU-CCGGCu----AGUGCa----------GCGGg--UGCCG- -5'
22688 5' -59.6 NC_005091.1 + 52792 0.67 0.44856
Target:  5'- gACGcGGCggCGAUCAgGcCGCaCGCGGCa -3'
miRNA:   3'- -UGCuCCG--GCUAGUgCaGCGgGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 53074 0.69 0.352169
Target:  5'- gACGuGcGCCGGUCAUGgugcgggguUCGCUgauCGCGGCg -3'
miRNA:   3'- -UGCuC-CGGCUAGUGC---------AGCGG---GUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 54926 0.68 0.402903
Target:  5'- uGCGgggauuuuGGGCUGAUgGCGcCGCCCggACGGg -3'
miRNA:   3'- -UGC--------UCCGGCUAgUGCaGCGGG--UGCCg -5'
22688 5' -59.6 NC_005091.1 + 55389 0.66 0.547522
Target:  5'- cGCGGGcggcaaagcuGUCGAUCugGUUGUUgACGGUu -3'
miRNA:   3'- -UGCUC----------CGGCUAGugCAGCGGgUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 57450 0.72 0.245952
Target:  5'- cAUGGGGCUGAUUuccauucaagGCGU-GCgCCACGGCu -3'
miRNA:   3'- -UGCUCCGGCUAG----------UGCAgCG-GGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.