miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22688 5' -59.6 NC_005091.1 + 30984 0.66 0.526047
Target:  5'- gACGuGGCCuGAUCccacgcuGCGcCGCCCgucaguugcACGGUg -3'
miRNA:   3'- -UGCuCCGG-CUAG-------UGCaGCGGG---------UGCCG- -5'
22688 5' -59.6 NC_005091.1 + 30137 0.7 0.328554
Target:  5'- cCGAGGCCGA-CGCuuUCGCgCGgGGCu -3'
miRNA:   3'- uGCUCCGGCUaGUGc-AGCGgGUgCCG- -5'
22688 5' -59.6 NC_005091.1 + 29525 0.75 0.159143
Target:  5'- uCGAGGUCGuugCGCGUCGCCUucuUGGUa -3'
miRNA:   3'- uGCUCCGGCua-GUGCAGCGGGu--GCCG- -5'
22688 5' -59.6 NC_005091.1 + 28941 0.69 0.339427
Target:  5'- cACGAGGCCguGAUCGgguCGUUGCgcuucgaggaucgaCACGGCa -3'
miRNA:   3'- -UGCUCCGG--CUAGU---GCAGCGg-------------GUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 26702 0.66 0.496936
Target:  5'- cGCGAuGGCCGcgCccucgACGgacCGCUUAUGGCg -3'
miRNA:   3'- -UGCU-CCGGCuaG-----UGCa--GCGGGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 26120 0.77 0.103741
Target:  5'- gGCGA-GCUGAUCGCGcUCGCC-ACGGCg -3'
miRNA:   3'- -UGCUcCGGCUAGUGC-AGCGGgUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 25245 1.11 0.000333
Target:  5'- cACGAGGCCGAUCACGUCGCCCACGGCg -3'
miRNA:   3'- -UGCUCCGGCUAGUGCAGCGGGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 25005 0.66 0.537259
Target:  5'- uACGAGGCaugGAUCaACGUCaagUACGGCa -3'
miRNA:   3'- -UGCUCCGg--CUAG-UGCAGcggGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 23524 0.66 0.51694
Target:  5'- gGCGAGcGUCaucaugcaGAUCAUGgcgaCGCgCGCGGCg -3'
miRNA:   3'- -UGCUC-CGG--------CUAGUGCa---GCGgGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 23360 0.67 0.458031
Target:  5'- cCGAGGCCGGUUccuACGgcaGCCgG-GGCa -3'
miRNA:   3'- uGCUCCGGCUAG---UGCag-CGGgUgCCG- -5'
22688 5' -59.6 NC_005091.1 + 22849 0.66 0.536236
Target:  5'- uCGAuGCCGAgcgCACG-CGCCUgaacgccgcgcugACGGCc -3'
miRNA:   3'- uGCUcCGGCUa--GUGCaGCGGG-------------UGCCG- -5'
22688 5' -59.6 NC_005091.1 + 21638 0.66 0.496936
Target:  5'- gGCGGgcGGCCGuucguUCgaACGUCGCcCCAUGcGCc -3'
miRNA:   3'- -UGCU--CCGGCu----AG--UGCAGCG-GGUGC-CG- -5'
22688 5' -59.6 NC_005091.1 + 20331 0.68 0.429948
Target:  5'- cGCGucGGCCGAuucgaUCACGcUCGaCUgCGCGGCu -3'
miRNA:   3'- -UGCu-CCGGCU-----AGUGC-AGC-GG-GUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 20258 0.66 0.547522
Target:  5'- uCGAaucGGCCGA-CGCGUCGCCgCuuuGCGaGUa -3'
miRNA:   3'- uGCU---CCGGCUaGUGCAGCGG-G---UGC-CG- -5'
22688 5' -59.6 NC_005091.1 + 17148 0.72 0.22819
Target:  5'- cCGAGGUCGAgagCACG-CGCa-GCGGCa -3'
miRNA:   3'- uGCUCCGGCUa--GUGCaGCGggUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 16770 0.66 0.496936
Target:  5'- cGCGGGGgacuuaccgaCGAUauaGCGaUCGCCCuCGGCc -3'
miRNA:   3'- -UGCUCCg---------GCUAg--UGC-AGCGGGuGCCG- -5'
22688 5' -59.6 NC_005091.1 + 16017 0.67 0.458031
Target:  5'- --cAGGCCGAcaaGCGUCgugcugccgccgGCCgGCGGCa -3'
miRNA:   3'- ugcUCCGGCUag-UGCAG------------CGGgUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 15919 0.7 0.328554
Target:  5'- cGCGAuaccGGCCGuaaccGUCugGUucguccacuuggCGCUCGCGGCg -3'
miRNA:   3'- -UGCU----CCGGC-----UAGugCA------------GCGGGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 15252 0.71 0.25842
Target:  5'- cACGcGGCCGGUCuCGUC-CCCgauccgggcgcaACGGCg -3'
miRNA:   3'- -UGCuCCGGCUAGuGCAGcGGG------------UGCCG- -5'
22688 5' -59.6 NC_005091.1 + 13132 0.67 0.44856
Target:  5'- gACGGGGCCGuauggCugGUC-CCCAaagauagcuCGGUc -3'
miRNA:   3'- -UGCUCCGGCua---GugCAGcGGGU---------GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.