miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22688 5' -59.6 NC_005091.1 + 51161 0.67 0.467608
Target:  5'- gGCGAuugacGGCCGuuccAUCAaugaaaaUCGCCCACGGg -3'
miRNA:   3'- -UGCU-----CCGGC----UAGUgc-----AGCGGGUGCCg -5'
22688 5' -59.6 NC_005091.1 + 28941 0.69 0.339427
Target:  5'- cACGAGGCCguGAUCGgguCGUUGCgcuucgaggaucgaCACGGCa -3'
miRNA:   3'- -UGCUCCGG--CUAGU---GCAGCGg-------------GUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 4182 0.68 0.418097
Target:  5'- -aGAuGGCCGAgcggauguccaaggUCcuguCGUUGCCCGgCGGCg -3'
miRNA:   3'- ugCU-CCGGCU--------------AGu---GCAGCGGGU-GCCG- -5'
22688 5' -59.6 NC_005091.1 + 3924 0.68 0.429948
Target:  5'- cGCGAGGCau-UCGCGcUUGCUCucgaaGCGGCc -3'
miRNA:   3'- -UGCUCCGgcuAGUGC-AGCGGG-----UGCCG- -5'
22688 5' -59.6 NC_005091.1 + 35655 0.67 0.447619
Target:  5'- cCGGGuaGCCGAcUCGCGUgcgcggaUGCCC-CGGCu -3'
miRNA:   3'- uGCUC--CGGCU-AGUGCA-------GCGGGuGCCG- -5'
22688 5' -59.6 NC_005091.1 + 52792 0.67 0.44856
Target:  5'- gACGcGGCggCGAUCAgGcCGCaCGCGGCa -3'
miRNA:   3'- -UGCuCCG--GCUAGUgCaGCGgGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 33215 0.67 0.458031
Target:  5'- uACGAGGCCGGcguaaugCGCGgcgaccaucUGCCCGC-GCa -3'
miRNA:   3'- -UGCUCCGGCUa------GUGCa--------GCGGGUGcCG- -5'
22688 5' -59.6 NC_005091.1 + 16017 0.67 0.458031
Target:  5'- --cAGGCCGAcaaGCGUCgugcugccgccgGCCgGCGGCa -3'
miRNA:   3'- ugcUCCGGCUag-UGCAG------------CGGgUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 23360 0.67 0.458031
Target:  5'- cCGAGGCCGGUUccuACGgcaGCCgG-GGCa -3'
miRNA:   3'- uGCUCCGGCUAG---UGCag-CGGgUgCCG- -5'
22688 5' -59.6 NC_005091.1 + 30137 0.7 0.328554
Target:  5'- cCGAGGCCGA-CGCuuUCGCgCGgGGCu -3'
miRNA:   3'- uGCUCCGGCUaGUGc-AGCGgGUgCCG- -5'
22688 5' -59.6 NC_005091.1 + 15919 0.7 0.328554
Target:  5'- cGCGAuaccGGCCGuaaccGUCugGUucguccacuuggCGCUCGCGGCg -3'
miRNA:   3'- -UGCU----CCGGC-----UAGugCA------------GCGGGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 42121 0.7 0.313472
Target:  5'- ---cGGCCGAUCACaaacggGUUGCCCcacaccgaaggGCGGCc -3'
miRNA:   3'- ugcuCCGGCUAGUG------CAGCGGG-----------UGCCG- -5'
22688 5' -59.6 NC_005091.1 + 41967 0.79 0.07892
Target:  5'- cGCGAGGUCGAgcagCACGUCGCCgu-GGCa -3'
miRNA:   3'- -UGCUCCGGCUa---GUGCAGCGGgugCCG- -5'
22688 5' -59.6 NC_005091.1 + 29525 0.75 0.159143
Target:  5'- uCGAGGUCGuugCGCGUCGCCUucuUGGUa -3'
miRNA:   3'- uGCUCCGGCua-GUGCAGCGGGu--GCCG- -5'
22688 5' -59.6 NC_005091.1 + 37242 0.73 0.195919
Target:  5'- gGCGAGGUCGAUgACcaUCGCCC-CGaGCg -3'
miRNA:   3'- -UGCUCCGGCUAgUGc-AGCGGGuGC-CG- -5'
22688 5' -59.6 NC_005091.1 + 12587 0.72 0.222515
Target:  5'- uGCGuGGCCGAuUCGCG-CGCCCGgucuCGGa -3'
miRNA:   3'- -UGCuCCGGCU-AGUGCaGCGGGU----GCCg -5'
22688 5' -59.6 NC_005091.1 + 56 0.72 0.245952
Target:  5'- cAUGGGGCUGAUUuccauucaagGCGU-GCgCCACGGCu -3'
miRNA:   3'- -UGCUCCGGCUAG----------UGCAgCG-GGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 57450 0.72 0.245952
Target:  5'- cAUGGGGCUGAUUuccauucaagGCGU-GCgCCACGGCu -3'
miRNA:   3'- -UGCUCCGGCUAG----------UGCAgCG-GGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 36715 0.71 0.282156
Target:  5'- cGCGAGGUCGAacggcUCGcCGUCGCCaucaacgucgucCGGCa -3'
miRNA:   3'- -UGCUCCGGCU-----AGU-GCAGCGGgu----------GCCG- -5'
22688 5' -59.6 NC_005091.1 + 40175 0.7 0.313472
Target:  5'- uACGAGaaaCCGAUCuucuCGUaCGUCUGCGGCg -3'
miRNA:   3'- -UGCUCc--GGCUAGu---GCA-GCGGGUGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.