miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22688 5' -59.6 NC_005091.1 + 29525 0.75 0.159143
Target:  5'- uCGAGGUCGuugCGCGUCGCCUucuUGGUa -3'
miRNA:   3'- uGCUCCGGCua-GUGCAGCGGGu--GCCG- -5'
22688 5' -59.6 NC_005091.1 + 37242 0.73 0.195919
Target:  5'- gGCGAGGUCGAUgACcaUCGCCC-CGaGCg -3'
miRNA:   3'- -UGCUCCGGCUAgUGc-AGCGGGuGC-CG- -5'
22688 5' -59.6 NC_005091.1 + 12587 0.72 0.222515
Target:  5'- uGCGuGGCCGAuUCGCG-CGCCCGgucuCGGa -3'
miRNA:   3'- -UGCuCCGGCU-AGUGCaGCGGGU----GCCg -5'
22688 5' -59.6 NC_005091.1 + 56 0.72 0.245952
Target:  5'- cAUGGGGCUGAUUuccauucaagGCGU-GCgCCACGGCu -3'
miRNA:   3'- -UGCUCCGGCUAG----------UGCAgCG-GGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 57450 0.72 0.245952
Target:  5'- cAUGGGGCUGAUUuccauucaagGCGU-GCgCCACGGCu -3'
miRNA:   3'- -UGCUCCGGCUAG----------UGCAgCG-GGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 36715 0.71 0.282156
Target:  5'- cGCGAGGUCGAacggcUCGcCGUCGCCaucaacgucgucCGGCa -3'
miRNA:   3'- -UGCUCCGGCU-----AGU-GCAGCGGgu----------GCCG- -5'
22688 5' -59.6 NC_005091.1 + 40175 0.7 0.313472
Target:  5'- uACGAGaaaCCGAUCuucuCGUaCGUCUGCGGCg -3'
miRNA:   3'- -UGCUCc--GGCUAGu---GCA-GCGGGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 35655 0.67 0.447619
Target:  5'- cCGGGuaGCCGAcUCGCGUgcgcggaUGCCC-CGGCu -3'
miRNA:   3'- uGCUC--CGGCU-AGUGCA-------GCGGGuGCCG- -5'
22688 5' -59.6 NC_005091.1 + 3924 0.68 0.429948
Target:  5'- cGCGAGGCau-UCGCGcUUGCUCucgaaGCGGCc -3'
miRNA:   3'- -UGCUCCGgcuAGUGC-AGCGGG-----UGCCG- -5'
22688 5' -59.6 NC_005091.1 + 4182 0.68 0.418097
Target:  5'- -aGAuGGCCGAgcggauguccaaggUCcuguCGUUGCCCGgCGGCg -3'
miRNA:   3'- ugCU-CCGGCU--------------AGu---GCAGCGGGU-GCCG- -5'
22688 5' -59.6 NC_005091.1 + 28941 0.69 0.339427
Target:  5'- cACGAGGCCguGAUCGgguCGUUGCgcuucgaggaucgaCACGGCa -3'
miRNA:   3'- -UGCUCCGG--CUAGU---GCAGCGg-------------GUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 30137 0.7 0.328554
Target:  5'- cCGAGGCCGA-CGCuuUCGCgCGgGGCu -3'
miRNA:   3'- uGCUCCGGCUaGUGc-AGCGgGUgCCG- -5'
22688 5' -59.6 NC_005091.1 + 15919 0.7 0.328554
Target:  5'- cGCGAuaccGGCCGuaaccGUCugGUucguccacuuggCGCUCGCGGCg -3'
miRNA:   3'- -UGCU----CCGGC-----UAGugCA------------GCGGGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 42121 0.7 0.313472
Target:  5'- ---cGGCCGAUCACaaacggGUUGCCCcacaccgaaggGCGGCc -3'
miRNA:   3'- ugcuCCGGCUAGUG------CAGCGGG-----------UGCCG- -5'
22688 5' -59.6 NC_005091.1 + 1827 0.66 0.51694
Target:  5'- gAUGAGGUCGAccgUCGCGacgugcuccuUCGCUU-CGGCa -3'
miRNA:   3'- -UGCUCCGGCU---AGUGC----------AGCGGGuGCCG- -5'
22688 5' -59.6 NC_005091.1 + 2660 0.66 0.52098
Target:  5'- uGCGAugccaucgagaauuuGGUCGAUCAguucgggGUCGCCCACGu- -3'
miRNA:   3'- -UGCU---------------CCGGCUAGUg------CAGCGGGUGCcg -5'
22688 5' -59.6 NC_005091.1 + 9948 0.66 0.527063
Target:  5'- uCGAGGauGAucgUCACGUaCGgCCACGGa -3'
miRNA:   3'- uGCUCCggCU---AGUGCA-GCgGGUGCCg -5'
22688 5' -59.6 NC_005091.1 + 22849 0.66 0.536236
Target:  5'- uCGAuGCCGAgcgCACG-CGCCUgaacgccgcgcugACGGCc -3'
miRNA:   3'- uGCUcCGGCUa--GUGCaGCGGG-------------UGCCG- -5'
22688 5' -59.6 NC_005091.1 + 25005 0.66 0.537259
Target:  5'- uACGAGGCaugGAUCaACGUCaagUACGGCa -3'
miRNA:   3'- -UGCUCCGg--CUAG-UGCAGcggGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 26120 0.77 0.103741
Target:  5'- gGCGA-GCUGAUCGCGcUCGCC-ACGGCg -3'
miRNA:   3'- -UGCUcCGGCUAGUGC-AGCGGgUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.