miRNA display CGI


Results 41 - 53 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22688 5' -59.6 NC_005091.1 + 17148 0.72 0.22819
Target:  5'- cCGAGGUCGAgagCACG-CGCa-GCGGCa -3'
miRNA:   3'- uGCUCCGGCUa--GUGCaGCGggUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 6299 0.75 0.147036
Target:  5'- uCGAGGCCGAUUACGUCGaaauaCUCGUGGUg -3'
miRNA:   3'- uGCUCCGGCUAGUGCAGC-----GGGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 13132 0.67 0.44856
Target:  5'- gACGGGGCCGuauggCugGUC-CCCAaagauagcuCGGUc -3'
miRNA:   3'- -UGCUCCGGCua---GugCAGcGGGU---------GCCG- -5'
22688 5' -59.6 NC_005091.1 + 48637 0.67 0.44856
Target:  5'- cGCGcAGGcCCGAUgAgGaUCGCUCGgGGCg -3'
miRNA:   3'- -UGC-UCC-GGCUAgUgC-AGCGGGUgCCG- -5'
22688 5' -59.6 NC_005091.1 + 55389 0.66 0.547522
Target:  5'- cGCGGGcggcaaagcuGUCGAUCugGUUGUUgACGGUu -3'
miRNA:   3'- -UGCUC----------CGGCUAGugCAGCGGgUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 25005 0.66 0.537259
Target:  5'- uACGAGGCaugGAUCaACGUCaagUACGGCa -3'
miRNA:   3'- -UGCUCCGg--CUAG-UGCAGcggGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 22849 0.66 0.536236
Target:  5'- uCGAuGCCGAgcgCACG-CGCCUgaacgccgcgcugACGGCc -3'
miRNA:   3'- uGCUcCGGCUa--GUGCaGCGGG-------------UGCCG- -5'
22688 5' -59.6 NC_005091.1 + 9948 0.66 0.527063
Target:  5'- uCGAGGauGAucgUCACGUaCGgCCACGGa -3'
miRNA:   3'- uGCUCCggCU---AGUGCA-GCgGGUGCCg -5'
22688 5' -59.6 NC_005091.1 + 2660 0.66 0.52098
Target:  5'- uGCGAugccaucgagaauuuGGUCGAUCAguucgggGUCGCCCACGu- -3'
miRNA:   3'- -UGCU---------------CCGGCUAGUg------CAGCGGGUGCcg -5'
22688 5' -59.6 NC_005091.1 + 1827 0.66 0.51694
Target:  5'- gAUGAGGUCGAccgUCGCGacgugcuccuUCGCUU-CGGCa -3'
miRNA:   3'- -UGCUCCGGCU---AGUGC----------AGCGGGuGCCG- -5'
22688 5' -59.6 NC_005091.1 + 23524 0.66 0.51694
Target:  5'- gGCGAGcGUCaucaugcaGAUCAUGgcgaCGCgCGCGGCg -3'
miRNA:   3'- -UGCUC-CGG--------CUAGUGCa---GCGgGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 44284 0.67 0.44856
Target:  5'- gGCGAagacGCCGcauacggCACuGUCGCgCACGGCg -3'
miRNA:   3'- -UGCUc---CGGCua-----GUG-CAGCGgGUGCCG- -5'
22688 5' -59.6 NC_005091.1 + 26120 0.77 0.103741
Target:  5'- gGCGA-GCUGAUCGCGcUCGCC-ACGGCg -3'
miRNA:   3'- -UGCUcCGGCUAGUGC-AGCGGgUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.