Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22688 | 5' | -59.6 | NC_005091.1 | + | 9116 | 0.66 | 0.506896 |
Target: 5'- cCGAuGuGCCGAgaaugUAUGUCGUCCAgaUGGCg -3' miRNA: 3'- uGCU-C-CGGCUa----GUGCAGCGGGU--GCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 34421 | 0.66 | 0.51694 |
Target: 5'- gGCGGucGGUCGAUaccaucuggaagCAgGUCGCgUACGGCc -3' miRNA: 3'- -UGCU--CCGGCUA------------GUgCAGCGgGUGCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 30984 | 0.66 | 0.526047 |
Target: 5'- gACGuGGCCuGAUCccacgcuGCGcCGCCCgucaguugcACGGUg -3' miRNA: 3'- -UGCuCCGG-CUAG-------UGCaGCGGG---------UGCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 56 | 0.72 | 0.245952 |
Target: 5'- cAUGGGGCUGAUUuccauucaagGCGU-GCgCCACGGCu -3' miRNA: 3'- -UGCUCCGGCUAG----------UGCAgCG-GGUGCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 26702 | 0.66 | 0.496936 |
Target: 5'- cGCGAuGGCCGcgCccucgACGgacCGCUUAUGGCg -3' miRNA: 3'- -UGCU-CCGGCuaG-----UGCa--GCGGGUGCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 21638 | 0.66 | 0.496936 |
Target: 5'- gGCGGgcGGCCGuucguUCgaACGUCGCcCCAUGcGCc -3' miRNA: 3'- -UGCU--CCGGCu----AG--UGCAGCG-GGUGC-CG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 16770 | 0.66 | 0.496936 |
Target: 5'- cGCGGGGgacuuaccgaCGAUauaGCGaUCGCCCuCGGCc -3' miRNA: 3'- -UGCUCCg---------GCUAg--UGC-AGCGGGuGCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 12587 | 0.72 | 0.222515 |
Target: 5'- uGCGuGGCCGAuUCGCG-CGCCCGgucuCGGa -3' miRNA: 3'- -UGCuCCGGCU-AGUGCaGCGGGU----GCCg -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 57450 | 0.72 | 0.245952 |
Target: 5'- cAUGGGGCUGAUUuccauucaagGCGU-GCgCCACGGCu -3' miRNA: 3'- -UGCUCCGGCUAG----------UGCAgCG-GGUGCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 42121 | 0.7 | 0.313472 |
Target: 5'- ---cGGCCGAUCACaaacggGUUGCCCcacaccgaaggGCGGCc -3' miRNA: 3'- ugcuCCGGCUAGUG------CAGCGGG-----------UGCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 15919 | 0.7 | 0.328554 |
Target: 5'- cGCGAuaccGGCCGuaaccGUCugGUucguccacuuggCGCUCGCGGCg -3' miRNA: 3'- -UGCU----CCGGC-----UAGugCA------------GCGGGUGCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 30137 | 0.7 | 0.328554 |
Target: 5'- cCGAGGCCGA-CGCuuUCGCgCGgGGCu -3' miRNA: 3'- uGCUCCGGCUaGUGc-AGCGgGUgCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 28941 | 0.69 | 0.339427 |
Target: 5'- cACGAGGCCguGAUCGgguCGUUGCgcuucgaggaucgaCACGGCa -3' miRNA: 3'- -UGCUCCGG--CUAGU---GCAGCGg-------------GUGCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 4182 | 0.68 | 0.418097 |
Target: 5'- -aGAuGGCCGAgcggauguccaaggUCcuguCGUUGCCCGgCGGCg -3' miRNA: 3'- ugCU-CCGGCU--------------AGu---GCAGCGGGU-GCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 3924 | 0.68 | 0.429948 |
Target: 5'- cGCGAGGCau-UCGCGcUUGCUCucgaaGCGGCc -3' miRNA: 3'- -UGCUCCGgcuAGUGC-AGCGGG-----UGCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 23360 | 0.67 | 0.458031 |
Target: 5'- cCGAGGCCGGUUccuACGgcaGCCgG-GGCa -3' miRNA: 3'- uGCUCCGGCUAG---UGCag-CGGgUgCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 51161 | 0.67 | 0.467608 |
Target: 5'- gGCGAuugacGGCCGuuccAUCAaugaaaaUCGCCCACGGg -3' miRNA: 3'- -UGCU-----CCGGC----UAGUgc-----AGCGGGUGCCg -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 32599 | 0.67 | 0.487065 |
Target: 5'- uACGAGGCgu-UCACGUCGgCCUgaauGCuGGCc -3' miRNA: 3'- -UGCUCCGgcuAGUGCAGC-GGG----UG-CCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 9554 | 0.67 | 0.487065 |
Target: 5'- gACGAGGCUGccGUguCGgcaGCCaucaACGGCg -3' miRNA: 3'- -UGCUCCGGC--UAguGCag-CGGg---UGCCG- -5' |
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22688 | 5' | -59.6 | NC_005091.1 | + | 33504 | 0.66 | 0.496936 |
Target: 5'- -aGAGGCCGGcaUCGaucCGCaUCACGGCu -3' miRNA: 3'- ugCUCCGGCU--AGUgcaGCG-GGUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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