miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22690 5' -59.2 NC_005091.1 + 3863 0.66 0.56173
Target:  5'- cCCGgaUGGCGA-CGaCGAUCGGagCGCCg -3'
miRNA:   3'- cGGC--ACCGCUcGC-GCUAGUCgaGCGG- -5'
22690 5' -59.2 NC_005091.1 + 23380 0.66 0.56173
Target:  5'- aGCCGgGGC-AGC-CGAcgCAGCgcCGCCg -3'
miRNA:   3'- -CGGCaCCGcUCGcGCUa-GUCGa-GCGG- -5'
22690 5' -59.2 NC_005091.1 + 52025 0.66 0.56173
Target:  5'- uUCGgGGCGAGCGUGAcuuccUCAaucGCgagauacgCGCCg -3'
miRNA:   3'- cGGCaCCGCUCGCGCU-----AGU---CGa-------GCGG- -5'
22690 5' -59.2 NC_005091.1 + 33656 0.66 0.55132
Target:  5'- cGCUGUcgaaauGCGAGUG-GAUCGGCgCGUCg -3'
miRNA:   3'- -CGGCAc-----CGCUCGCgCUAGUCGaGCGG- -5'
22690 5' -59.2 NC_005091.1 + 29481 0.66 0.55132
Target:  5'- aCCG-GGCGAGCGaCGuaggacgcuGGCgcgCGCCg -3'
miRNA:   3'- cGGCaCCGCUCGC-GCuag------UCGa--GCGG- -5'
22690 5' -59.2 NC_005091.1 + 16308 0.66 0.548209
Target:  5'- uGCCGgcGGCcucgucccugauccGGGCGCGA-CGGCgggCGCg -3'
miRNA:   3'- -CGGCa-CCG--------------CUCGCGCUaGUCGa--GCGg -5'
22690 5' -59.2 NC_005091.1 + 42409 0.66 0.54097
Target:  5'- cGCUGaugcGGCcuucGC-CGAUCGGCUCGUCg -3'
miRNA:   3'- -CGGCa---CCGcu--CGcGCUAGUCGAGCGG- -5'
22690 5' -59.2 NC_005091.1 + 52933 0.66 0.54097
Target:  5'- cGCCaGUcacGGCGAacgaaCGCGAgCAGCcguUCGCCa -3'
miRNA:   3'- -CGG-CA---CCGCUc----GCGCUaGUCG---AGCGG- -5'
22690 5' -59.2 NC_005091.1 + 4021 0.66 0.534791
Target:  5'- aUCGUGGCGgccgcuucgagagcaAGCGCGAau-GCcucgCGCCg -3'
miRNA:   3'- cGGCACCGC---------------UCGCGCUaguCGa---GCGG- -5'
22690 5' -59.2 NC_005091.1 + 9286 0.66 0.530686
Target:  5'- cGCCGcUGGCc-GC-CGAcCGGCUgGCCg -3'
miRNA:   3'- -CGGC-ACCGcuCGcGCUaGUCGAgCGG- -5'
22690 5' -59.2 NC_005091.1 + 15468 0.66 0.530686
Target:  5'- aCCaccaCGAGCGaCGAUCAGCuUCGCUg -3'
miRNA:   3'- cGGcaccGCUCGC-GCUAGUCG-AGCGG- -5'
22690 5' -59.2 NC_005091.1 + 11474 0.66 0.510339
Target:  5'- gGCCGaaGCGcAGCGUGAcgCGGCcgaCGCCc -3'
miRNA:   3'- -CGGCacCGC-UCGCGCUa-GUCGa--GCGG- -5'
22690 5' -59.2 NC_005091.1 + 45112 0.66 0.510339
Target:  5'- cGCCGgaagagcaGGaaacCGAGCGCacgaaacuGGUCcugaAGCUCGCCg -3'
miRNA:   3'- -CGGCa-------CC----GCUCGCG--------CUAG----UCGAGCGG- -5'
22690 5' -59.2 NC_005091.1 + 25722 0.67 0.500288
Target:  5'- -gCGcGGCcAGCucgGCGAUCGGCUgccCGCCg -3'
miRNA:   3'- cgGCaCCGcUCG---CGCUAGUCGA---GCGG- -5'
22690 5' -59.2 NC_005091.1 + 26795 0.67 0.500288
Target:  5'- cGCC-UGauCGAGCGC-AUCAGCagCGCCu -3'
miRNA:   3'- -CGGcACc-GCUCGCGcUAGUCGa-GCGG- -5'
22690 5' -59.2 NC_005091.1 + 44191 0.67 0.500288
Target:  5'- cGCCGUGcGCGAcaGUGCcguaugCGGCgucuUCGCCu -3'
miRNA:   3'- -CGGCAC-CGCU--CGCGcua---GUCG----AGCGG- -5'
22690 5' -59.2 NC_005091.1 + 57353 0.67 0.494299
Target:  5'- uGCCGUGGUccuccugccgacgccGGGuUGCGGgaugaUCGGCUUGUCc -3'
miRNA:   3'- -CGGCACCG---------------CUC-GCGCU-----AGUCGAGCGG- -5'
22690 5' -59.2 NC_005091.1 + 44773 0.67 0.490325
Target:  5'- cGCCGUGGuCGuugccuucGUGCcuUCGGC-CGCCu -3'
miRNA:   3'- -CGGCACC-GCu-------CGCGcuAGUCGaGCGG- -5'
22690 5' -59.2 NC_005091.1 + 1184 0.67 0.484392
Target:  5'- -gCGUGuCGAuCGCGAgccgggacuuaugcuUCAGCUUGCCg -3'
miRNA:   3'- cgGCACcGCUcGCGCU---------------AGUCGAGCGG- -5'
22690 5' -59.2 NC_005091.1 + 35661 0.67 0.474581
Target:  5'- aGCCGacucGCGuGCGCGGaugccccggcuuaGGCUCGCCc -3'
miRNA:   3'- -CGGCac--CGCuCGCGCUag-----------UCGAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.