miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22691 5' -54.5 NC_005091.1 + 7392 0.66 0.789854
Target:  5'- cGACugGUCUGGUGCGCcucggcuUGGUCGaGCu -3'
miRNA:   3'- cUUG--UAGACCAUGCGcu-----ACCGGCgCG- -5'
22691 5' -54.5 NC_005091.1 + 9286 0.66 0.789854
Target:  5'- -cGCcgCUGGc-CGcCGAccggcUGGCCGUGCg -3'
miRNA:   3'- cuUGuaGACCauGC-GCU-----ACCGGCGCG- -5'
22691 5' -54.5 NC_005091.1 + 36693 0.66 0.789854
Target:  5'- cGAACGUCgUGGUccgcuucgACGCGA-GGUCGaacgGCu -3'
miRNA:   3'- -CUUGUAG-ACCA--------UGCGCUaCCGGCg---CG- -5'
22691 5' -54.5 NC_005091.1 + 33839 0.66 0.779944
Target:  5'- cGAGCAUCcaagccGGcauCGCGAUGacGCgGCGCu -3'
miRNA:   3'- -CUUGUAGa-----CCau-GCGCUAC--CGgCGCG- -5'
22691 5' -54.5 NC_005091.1 + 35134 0.66 0.738878
Target:  5'- cAGCAgcuUgUGGUACGCGucgcgGcGCCGcCGCg -3'
miRNA:   3'- cUUGU---AgACCAUGCGCua---C-CGGC-GCG- -5'
22691 5' -54.5 NC_005091.1 + 34298 0.67 0.721925
Target:  5'- --cCAUCUGGUacaggucgccgggguGCGCGAccugaauccagUagcccugcggccGGCCGCGCu -3'
miRNA:   3'- cuuGUAGACCA---------------UGCGCU-----------A------------CCGGCGCG- -5'
22691 5' -54.5 NC_005091.1 + 23327 0.67 0.6852
Target:  5'- cGGCGagCUGGUuuGCGAacgcGCCGCGCu -3'
miRNA:   3'- cUUGUa-GACCAugCGCUac--CGGCGCG- -5'
22691 5' -54.5 NC_005091.1 + 14089 0.69 0.575303
Target:  5'- cGGAUAUgUGGcGCGCGAUcuccggaacgGGCgGUGCg -3'
miRNA:   3'- -CUUGUAgACCaUGCGCUA----------CCGgCGCG- -5'
22691 5' -54.5 NC_005091.1 + 1285 0.69 0.575303
Target:  5'- --uCAUCaUGGU-CGgGAUGGCCGgGUu -3'
miRNA:   3'- cuuGUAG-ACCAuGCgCUACCGGCgCG- -5'
22691 5' -54.5 NC_005091.1 + 45683 0.7 0.521523
Target:  5'- aGAACuUCgGGauggcuccugUACGCGucGGCCGCGCg -3'
miRNA:   3'- -CUUGuAGaCC----------AUGCGCuaCCGGCGCG- -5'
22691 5' -54.5 NC_005091.1 + 567 0.72 0.440063
Target:  5'- cGAGCAUCcgaccgcaaccGGUACGUGGUGuauccGUCGCGCg -3'
miRNA:   3'- -CUUGUAGa----------CCAUGCGCUAC-----CGGCGCG- -5'
22691 5' -54.5 NC_005091.1 + 57960 0.72 0.440063
Target:  5'- cGAGCAUCcgaccgcaaccGGUACGUGGUGuauccGUCGCGCg -3'
miRNA:   3'- -CUUGUAGa----------CCAUGCGCUAC-----CGGCGCG- -5'
22691 5' -54.5 NC_005091.1 + 662 0.73 0.366341
Target:  5'- cGGGCAUCgcGGaaaucUACGCGGacUGcGCCGCGCg -3'
miRNA:   3'- -CUUGUAGa-CC-----AUGCGCU--AC-CGGCGCG- -5'
22691 5' -54.5 NC_005091.1 + 56773 0.75 0.294137
Target:  5'- cGAGCAUCUcggucGGUugaucgcgggcaACGCGAUGGCguggcugcacCGCGCa -3'
miRNA:   3'- -CUUGUAGA-----CCA------------UGCGCUACCG----------GCGCG- -5'
22691 5' -54.5 NC_005091.1 + 51983 0.75 0.265792
Target:  5'- -uGCGUCcGGUAgcuCGCGAUGGUCgGCGCu -3'
miRNA:   3'- cuUGUAGaCCAU---GCGCUACCGG-CGCG- -5'
22691 5' -54.5 NC_005091.1 + 26689 1.11 0.000919
Target:  5'- cGAACAUCUGGUACGCGAUGGCCGCGCc -3'
miRNA:   3'- -CUUGUAGACCAUGCGCUACCGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.