miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22692 5' -54.5 NC_005091.1 + 10872 0.66 0.825388
Target:  5'- cCUUG-GCCGCGAUcGUUCGCgCAcUCUg -3'
miRNA:   3'- aGAGCuUGGCGCUGcCAAGCG-GU-AGG- -5'
22692 5' -54.5 NC_005091.1 + 34438 0.66 0.825388
Target:  5'- aUCUgGAAgcaggUCGCGuacggcCGGUUCGCCgcgcgGUCCc -3'
miRNA:   3'- -AGAgCUU-----GGCGCu-----GCCAAGCGG-----UAGG- -5'
22692 5' -54.5 NC_005091.1 + 40190 0.66 0.825388
Target:  5'- uUCUCGuacguCUGCGGCGa---GCCGUCUu -3'
miRNA:   3'- -AGAGCuu---GGCGCUGCcaagCGGUAGG- -5'
22692 5' -54.5 NC_005091.1 + 18184 0.66 0.816302
Target:  5'- --gUGAACCGCuucaACGGcgUGCCGUUCg -3'
miRNA:   3'- agaGCUUGGCGc---UGCCaaGCGGUAGG- -5'
22692 5' -54.5 NC_005091.1 + 38394 0.66 0.797574
Target:  5'- aUUUGAACCaguacgcuacgaGCaGCGGcUCGCCGUUCa -3'
miRNA:   3'- aGAGCUUGG------------CGcUGCCaAGCGGUAGG- -5'
22692 5' -54.5 NC_005091.1 + 50627 0.66 0.797574
Target:  5'- -gUUGAcguacGCgGCGGcCGGUUCGUCGuUCCg -3'
miRNA:   3'- agAGCU-----UGgCGCU-GCCAAGCGGU-AGG- -5'
22692 5' -54.5 NC_005091.1 + 50304 0.66 0.797574
Target:  5'- gCUCGcGGCCGaucaccCGGCaGGUgauaUCGCCAUUCa -3'
miRNA:   3'- aGAGC-UUGGC------GCUG-CCA----AGCGGUAGG- -5'
22692 5' -54.5 NC_005091.1 + 25469 0.66 0.787953
Target:  5'- uUCgCGGA-CGCGugGaccaaGUUCGCCGUCg -3'
miRNA:   3'- -AGaGCUUgGCGCugC-----CAAGCGGUAGg -5'
22692 5' -54.5 NC_005091.1 + 42873 0.66 0.787953
Target:  5'- uUCUCGAuaCGC-AUGGU--GCCGUCCg -3'
miRNA:   3'- -AGAGCUugGCGcUGCCAagCGGUAGG- -5'
22692 5' -54.5 NC_005091.1 + 23782 0.66 0.786982
Target:  5'- aUCUgCGGGCCgcucuccguguacGCGGCcuugauuuucuGGUUCGCCucuUCCu -3'
miRNA:   3'- -AGA-GCUUGG-------------CGCUG-----------CCAAGCGGu--AGG- -5'
22692 5' -54.5 NC_005091.1 + 13590 0.66 0.782104
Target:  5'- -gUCGAGCaGCGAcgugaaCGGUcucggcggcgcaccgUCGCCAUUCg -3'
miRNA:   3'- agAGCUUGgCGCU------GCCA---------------AGCGGUAGG- -5'
22692 5' -54.5 NC_005091.1 + 52890 0.66 0.777189
Target:  5'- gCUUGAugcugcuGCCGCGuGCGGccugaUCGCCG-CCg -3'
miRNA:   3'- aGAGCU-------UGGCGC-UGCCa----AGCGGUaGG- -5'
22692 5' -54.5 NC_005091.1 + 36545 0.67 0.768249
Target:  5'- -aUCG-ACgGCGACGG-UCGCC--CCg -3'
miRNA:   3'- agAGCuUGgCGCUGCCaAGCGGuaGG- -5'
22692 5' -54.5 NC_005091.1 + 31134 0.67 0.768249
Target:  5'- uUCUCGAugCGCuGGCGcuGUUCGagcugcgaAUCCg -3'
miRNA:   3'- -AGAGCUugGCG-CUGC--CAAGCgg------UAGG- -5'
22692 5' -54.5 NC_005091.1 + 52137 0.67 0.768249
Target:  5'- aUCUCGaAGCgCGCGGCGcGUaucUCGCgAUUg -3'
miRNA:   3'- -AGAGC-UUG-GCGCUGC-CA---AGCGgUAGg -5'
22692 5' -54.5 NC_005091.1 + 9837 0.67 0.758187
Target:  5'- aUUCGGAUCGCGAUuuccaCGaCCAUCCg -3'
miRNA:   3'- aGAGCUUGGCGCUGccaa-GC-GGUAGG- -5'
22692 5' -54.5 NC_005091.1 + 40268 0.67 0.758187
Target:  5'- uUCUCGAugCGCGGucgaUGGUaguaCAUCCg -3'
miRNA:   3'- -AGAGCUugGCGCU----GCCAagcgGUAGG- -5'
22692 5' -54.5 NC_005091.1 + 3943 0.67 0.737699
Target:  5'- cUCUCGAagcgGCCGCcacGAUGGUgagaaaCGCCccgccugaAUCCg -3'
miRNA:   3'- -AGAGCU----UGGCG---CUGCCAa-----GCGG--------UAGG- -5'
22692 5' -54.5 NC_005091.1 + 7892 0.67 0.737699
Target:  5'- -gUCGuAGCCucGCGACGGUUCGauggguggGUCCa -3'
miRNA:   3'- agAGC-UUGG--CGCUGCCAAGCgg------UAGG- -5'
22692 5' -54.5 NC_005091.1 + 34284 0.67 0.737699
Target:  5'- cCUCGAACCGCGcgaacCGGaucagUCGCgCGgcauugCCg -3'
miRNA:   3'- aGAGCUUGGCGCu----GCCa----AGCG-GUa-----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.