miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22694 3' -58 NC_005091.1 + 32332 0.66 0.600939
Target:  5'- cGGUCGGccuUGAUAGCaGCaCGGCGUUCGg -3'
miRNA:   3'- uUUAGCC---ACUGUCG-CG-GCUGCGGGCg -5'
22694 3' -58 NC_005091.1 + 55034 0.66 0.600939
Target:  5'- ---aCGG-GACAGcCGCgCGGCGCuuGg -3'
miRNA:   3'- uuuaGCCaCUGUC-GCG-GCUGCGggCg -5'
22694 3' -58 NC_005091.1 + 2072 0.66 0.590193
Target:  5'- ---aUGGccgcGACAGCGUCGAUGUgCGUg -3'
miRNA:   3'- uuuaGCCa---CUGUCGCGGCUGCGgGCG- -5'
22694 3' -58 NC_005091.1 + 55719 0.66 0.590193
Target:  5'- ---gCGGaugGACcguGaCGCUGACgGCCCGCg -3'
miRNA:   3'- uuuaGCCa--CUGu--C-GCGGCUG-CGGGCG- -5'
22694 3' -58 NC_005091.1 + 23547 0.66 0.585903
Target:  5'- -cAUCGGcGGCAGCGagaagcuggucaaCGACGUUCGUc -3'
miRNA:   3'- uuUAGCCaCUGUCGCg------------GCUGCGGGCG- -5'
22694 3' -58 NC_005091.1 + 26655 0.66 0.57948
Target:  5'- cGAGUCGGcGGCccGGCGuuGAgCGCaucaCGCg -3'
miRNA:   3'- -UUUAGCCaCUG--UCGCggCU-GCGg---GCG- -5'
22694 3' -58 NC_005091.1 + 23009 0.66 0.568808
Target:  5'- uAGGUUGuGaUGACGGUaucgccugccGCCGACGCCauCGCa -3'
miRNA:   3'- -UUUAGC-C-ACUGUCG----------CGGCUGCGG--GCG- -5'
22694 3' -58 NC_005091.1 + 15352 0.66 0.568808
Target:  5'- -uGUCGGUGA-AGCGCCcacgGACGgCCa- -3'
miRNA:   3'- uuUAGCCACUgUCGCGG----CUGCgGGcg -5'
22694 3' -58 NC_005091.1 + 22115 0.66 0.553954
Target:  5'- -uAUCGGccgcauggGACGGCaGCCaaaaaggcgugacGCGCCCGCg -3'
miRNA:   3'- uuUAGCCa-------CUGUCG-CGGc------------UGCGGGCG- -5'
22694 3' -58 NC_005091.1 + 13766 0.67 0.526692
Target:  5'- uGGUCGGUcggcacGACGGagaGCCGuuucaGCGUCCGUg -3'
miRNA:   3'- uUUAGCCA------CUGUCg--CGGC-----UGCGGGCG- -5'
22694 3' -58 NC_005091.1 + 23475 0.67 0.516339
Target:  5'- --cUCGGUcuguucGGCGGCGCUG-CGUCgGCu -3'
miRNA:   3'- uuuAGCCA------CUGUCGCGGCuGCGGgCG- -5'
22694 3' -58 NC_005091.1 + 45708 0.67 0.506068
Target:  5'- -cGUCGGccGC-GCGCCG-CGCCgGCu -3'
miRNA:   3'- uuUAGCCacUGuCGCGGCuGCGGgCG- -5'
22694 3' -58 NC_005091.1 + 45810 0.67 0.506068
Target:  5'- --cUCGGUGcaucggaagaGCAGUaGCCGGCGCggCGCg -3'
miRNA:   3'- uuuAGCCAC----------UGUCG-CGGCUGCGg-GCG- -5'
22694 3' -58 NC_005091.1 + 15443 0.68 0.475808
Target:  5'- uGAUCGGUGuACGGCcCCG-CaCCCGUg -3'
miRNA:   3'- uUUAGCCAC-UGUCGcGGCuGcGGGCG- -5'
22694 3' -58 NC_005091.1 + 52364 0.68 0.456144
Target:  5'- gGAAUCGaGaUGACgacaAGCGCgGAUGUUCGCg -3'
miRNA:   3'- -UUUAGC-C-ACUG----UCGCGgCUGCGGGCG- -5'
22694 3' -58 NC_005091.1 + 3606 0.68 0.456144
Target:  5'- aGGAUCGG-GaACAGCGa-GACGCCUuGCg -3'
miRNA:   3'- -UUUAGCCaC-UGUCGCggCUGCGGG-CG- -5'
22694 3' -58 NC_005091.1 + 53668 0.68 0.456144
Target:  5'- gGAAUCGGacGGC-GCGCCGggguuGCGCUgGCa -3'
miRNA:   3'- -UUUAGCCa-CUGuCGCGGC-----UGCGGgCG- -5'
22694 3' -58 NC_005091.1 + 5813 0.68 0.446476
Target:  5'- --cUCGGUGAacgauucCGCCGAUGCaaCCGCu -3'
miRNA:   3'- uuuAGCCACUguc----GCGGCUGCG--GGCG- -5'
22694 3' -58 NC_005091.1 + 31823 0.68 0.436924
Target:  5'- --uUCGaggaccGUGGCAGCaGCCacguuCGCCCGCg -3'
miRNA:   3'- uuuAGC------CACUGUCG-CGGcu---GCGGGCG- -5'
22694 3' -58 NC_005091.1 + 19987 0.69 0.408992
Target:  5'- cGAUUGGUucGAguGCGCCGAgGCggguucgaaggCCGCa -3'
miRNA:   3'- uUUAGCCA--CUguCGCGGCUgCG-----------GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.