miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22694 3' -58 NC_005091.1 + 28171 1.1 0.000501
Target:  5'- gAAAUCGGUGACAGCGCCGACGCCCGCg -3'
miRNA:   3'- -UUUAGCCACUGUCGCGGCUGCGGGCG- -5'
22694 3' -58 NC_005091.1 + 8849 0.72 0.2666
Target:  5'- --uUCGGUGuuGGCGCUGcuGCGCUgGCg -3'
miRNA:   3'- uuuAGCCACugUCGCGGC--UGCGGgCG- -5'
22694 3' -58 NC_005091.1 + 26352 0.72 0.2666
Target:  5'- ---aCGaUGGCAGCcCCGGCgGCCCGCg -3'
miRNA:   3'- uuuaGCcACUGUCGcGGCUG-CGGGCG- -5'
22694 3' -58 NC_005091.1 + 24581 0.72 0.279528
Target:  5'- cGAUCGG-GGCGGCGUCGuugcaagGCGCgCGCc -3'
miRNA:   3'- uUUAGCCaCUGUCGCGGC-------UGCGgGCG- -5'
22694 3' -58 NC_005091.1 + 49124 0.7 0.34022
Target:  5'- ---aCGGUGcGCAGCaGC--GCGCCCGCa -3'
miRNA:   3'- uuuaGCCAC-UGUCG-CGgcUGCGGGCG- -5'
22694 3' -58 NC_005091.1 + 22056 0.7 0.348343
Target:  5'- -cGUCGGUcGACAGUGCCGGCaauGUaucgUCGCg -3'
miRNA:   3'- uuUAGCCA-CUGUCGCGGCUG---CG----GGCG- -5'
22694 3' -58 NC_005091.1 + 11463 0.7 0.348343
Target:  5'- ----aGcGUGAC-GCgGCCGACGCCCGg -3'
miRNA:   3'- uuuagC-CACUGuCG-CGGCUGCGGGCg -5'
22694 3' -58 NC_005091.1 + 14424 0.7 0.348343
Target:  5'- ---gCGGUGAgAGCGaCCGGCGUCgGg -3'
miRNA:   3'- uuuaGCCACUgUCGC-GGCUGCGGgCg -5'
22694 3' -58 NC_005091.1 + 20190 0.69 0.382201
Target:  5'- cGAAUCGGuUGGCGGCGuuCCG-CGCCacuGCu -3'
miRNA:   3'- -UUUAGCC-ACUGUCGC--GGCuGCGGg--CG- -5'
22694 3' -58 NC_005091.1 + 19987 0.69 0.408992
Target:  5'- cGAUUGGUucGAguGCGCCGAgGCggguucgaaggCCGCa -3'
miRNA:   3'- uUUAGCCA--CUguCGCGGCUgCG-----------GGCG- -5'
22694 3' -58 NC_005091.1 + 31823 0.68 0.436924
Target:  5'- --uUCGaggaccGUGGCAGCaGCCacguuCGCCCGCg -3'
miRNA:   3'- uuuAGC------CACUGUCG-CGGcu---GCGGGCG- -5'
22694 3' -58 NC_005091.1 + 5813 0.68 0.446476
Target:  5'- --cUCGGUGAacgauucCGCCGAUGCaaCCGCu -3'
miRNA:   3'- uuuAGCCACUguc----GCGGCUGCG--GGCG- -5'
22694 3' -58 NC_005091.1 + 52364 0.68 0.456144
Target:  5'- gGAAUCGaGaUGACgacaAGCGCgGAUGUUCGCg -3'
miRNA:   3'- -UUUAGC-C-ACUG----UCGCGgCUGCGGGCG- -5'
22694 3' -58 NC_005091.1 + 3606 0.68 0.456144
Target:  5'- aGGAUCGG-GaACAGCGa-GACGCCUuGCg -3'
miRNA:   3'- -UUUAGCCaC-UGUCGCggCUGCGGG-CG- -5'
22694 3' -58 NC_005091.1 + 53668 0.68 0.456144
Target:  5'- gGAAUCGGacGGC-GCGCCGggguuGCGCUgGCa -3'
miRNA:   3'- -UUUAGCCa-CUGuCGCGGC-----UGCGGgCG- -5'
22694 3' -58 NC_005091.1 + 15443 0.68 0.475808
Target:  5'- uGAUCGGUGuACGGCcCCG-CaCCCGUg -3'
miRNA:   3'- uUUAGCCAC-UGUCGcGGCuGcGGGCG- -5'
22694 3' -58 NC_005091.1 + 45810 0.67 0.506068
Target:  5'- --cUCGGUGcaucggaagaGCAGUaGCCGGCGCggCGCg -3'
miRNA:   3'- uuuAGCCAC----------UGUCG-CGGCUGCGg-GCG- -5'
22694 3' -58 NC_005091.1 + 45708 0.67 0.506068
Target:  5'- -cGUCGGccGC-GCGCCG-CGCCgGCu -3'
miRNA:   3'- uuUAGCCacUGuCGCGGCuGCGGgCG- -5'
22694 3' -58 NC_005091.1 + 23475 0.67 0.516339
Target:  5'- --cUCGGUcuguucGGCGGCGCUG-CGUCgGCu -3'
miRNA:   3'- uuuAGCCA------CUGUCGCGGCuGCGGgCG- -5'
22694 3' -58 NC_005091.1 + 13766 0.67 0.526692
Target:  5'- uGGUCGGUcggcacGACGGagaGCCGuuucaGCGUCCGUg -3'
miRNA:   3'- uUUAGCCA------CUGUCg--CGGC-----UGCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.