Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22694 | 3' | -58 | NC_005091.1 | + | 20190 | 0.69 | 0.382201 |
Target: 5'- cGAAUCGGuUGGCGGCGuuCCG-CGCCacuGCu -3' miRNA: 3'- -UUUAGCC-ACUGUCGC--GGCuGCGGg--CG- -5' |
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22694 | 3' | -58 | NC_005091.1 | + | 11463 | 0.7 | 0.348343 |
Target: 5'- ----aGcGUGAC-GCgGCCGACGCCCGg -3' miRNA: 3'- uuuagC-CACUGuCG-CGGCUGCGGGCg -5' |
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22694 | 3' | -58 | NC_005091.1 | + | 22056 | 0.7 | 0.348343 |
Target: 5'- -cGUCGGUcGACAGUGCCGGCaauGUaucgUCGCg -3' miRNA: 3'- uuUAGCCA-CUGUCGCGGCUG---CG----GGCG- -5' |
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22694 | 3' | -58 | NC_005091.1 | + | 14424 | 0.7 | 0.348343 |
Target: 5'- ---gCGGUGAgAGCGaCCGGCGUCgGg -3' miRNA: 3'- uuuaGCCACUgUCGC-GGCUGCGGgCg -5' |
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22694 | 3' | -58 | NC_005091.1 | + | 49124 | 0.7 | 0.34022 |
Target: 5'- ---aCGGUGcGCAGCaGC--GCGCCCGCa -3' miRNA: 3'- uuuaGCCAC-UGUCG-CGgcUGCGGGCG- -5' |
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22694 | 3' | -58 | NC_005091.1 | + | 24581 | 0.72 | 0.279528 |
Target: 5'- cGAUCGG-GGCGGCGUCGuugcaagGCGCgCGCc -3' miRNA: 3'- uUUAGCCaCUGUCGCGGC-------UGCGgGCG- -5' |
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22694 | 3' | -58 | NC_005091.1 | + | 26352 | 0.72 | 0.2666 |
Target: 5'- ---aCGaUGGCAGCcCCGGCgGCCCGCg -3' miRNA: 3'- uuuaGCcACUGUCGcGGCUG-CGGGCG- -5' |
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22694 | 3' | -58 | NC_005091.1 | + | 8849 | 0.72 | 0.2666 |
Target: 5'- --uUCGGUGuuGGCGCUGcuGCGCUgGCg -3' miRNA: 3'- uuuAGCCACugUCGCGGC--UGCGGgCG- -5' |
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22694 | 3' | -58 | NC_005091.1 | + | 28171 | 1.1 | 0.000501 |
Target: 5'- gAAAUCGGUGACAGCGCCGACGCCCGCg -3' miRNA: 3'- -UUUAGCCACUGUCGCGGCUGCGGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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