miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22695 5' -58.5 NC_005091.1 + 15334 0.66 0.577295
Target:  5'- gGACGGCCaacGGUacacgCGcGGCGGCaGCGGGa -3'
miRNA:   3'- -CUGCCGG---UCAa----GC-UCGCUGcCGCUCa -5'
22695 5' -58.5 NC_005091.1 + 37224 0.66 0.577295
Target:  5'- cGGCGGCCGGaa-GA-UGuCGGCGAGg -3'
miRNA:   3'- -CUGCCGGUCaagCUcGCuGCCGCUCa -5'
22695 5' -58.5 NC_005091.1 + 18468 0.66 0.556171
Target:  5'- aGACGGCaa-UUCGAGCGACa-CGAGc -3'
miRNA:   3'- -CUGCCGgucAAGCUCGCUGccGCUCa -5'
22695 5' -58.5 NC_005091.1 + 37437 0.66 0.556171
Target:  5'- aGCGGaggaAGU---GGCGACGGCGAGg -3'
miRNA:   3'- cUGCCgg--UCAagcUCGCUGCCGCUCa -5'
22695 5' -58.5 NC_005091.1 + 45315 0.67 0.488366
Target:  5'- cGCGGCCGGUagacgacagagcgcCGAGCGuauUGGaCGAGUa -3'
miRNA:   3'- cUGCCGGUCAa-------------GCUCGCu--GCC-GCUCA- -5'
22695 5' -58.5 NC_005091.1 + 46196 0.67 0.47842
Target:  5'- cGACGGCCA---CGAGCG-CGGCcucgaacucuggcacGAGUg -3'
miRNA:   3'- -CUGCCGGUcaaGCUCGCuGCCG---------------CUCA- -5'
22695 5' -58.5 NC_005091.1 + 15250 0.67 0.47447
Target:  5'- cGCGGCCGGUcucguccccgaUcCGGGCGcaACGGCGGa- -3'
miRNA:   3'- cUGCCGGUCA-----------A-GCUCGC--UGCCGCUca -5'
22695 5' -58.5 NC_005091.1 + 16305 0.67 0.47447
Target:  5'- cGGCGGCCucGUcccugaucCGGgcGCGACGGCGGGc -3'
miRNA:   3'- -CUGCCGGu-CAa-------GCU--CGCUGCCGCUCa -5'
22695 5' -58.5 NC_005091.1 + 16687 0.67 0.471518
Target:  5'- aGGCGGCgCAGggaggCauucccgacgcaccGAGCGACGGCGuGg -3'
miRNA:   3'- -CUGCCG-GUCaa---G--------------CUCGCUGCCGCuCa -5'
22695 5' -58.5 NC_005091.1 + 9494 0.68 0.464666
Target:  5'- --aGGCCGGcagccGCGAUGGCGAGUu -3'
miRNA:   3'- cugCCGGUCaagcuCGCUGCCGCUCA- -5'
22695 5' -58.5 NC_005091.1 + 19936 0.68 0.464666
Target:  5'- uGGCGGCUucaugaAGUUCGAGCG-CGaGcCGGGa -3'
miRNA:   3'- -CUGCCGG------UCAAGCUCGCuGC-C-GCUCa -5'
22695 5' -58.5 NC_005091.1 + 25721 0.68 0.454969
Target:  5'- cGCGGCCAGcUCG-GCGAuCGGCu--- -3'
miRNA:   3'- cUGCCGGUCaAGCuCGCU-GCCGcuca -5'
22695 5' -58.5 NC_005091.1 + 32026 0.68 0.454969
Target:  5'- uGCGGCCcGUcgccuuggCGAGCGAC-GCGAGc -3'
miRNA:   3'- cUGCCGGuCAa-------GCUCGCUGcCGCUCa -5'
22695 5' -58.5 NC_005091.1 + 36423 0.68 0.454969
Target:  5'- gGACGGCgAG-UCGA-UGACGGCGGa- -3'
miRNA:   3'- -CUGCCGgUCaAGCUcGCUGCCGCUca -5'
22695 5' -58.5 NC_005091.1 + 57828 0.68 0.426554
Target:  5'- cGACGGCgCAGgUCGAGCagcaauCGGCGGu- -3'
miRNA:   3'- -CUGCCG-GUCaAGCUCGcu----GCCGCUca -5'
22695 5' -58.5 NC_005091.1 + 434 0.68 0.426554
Target:  5'- cGACGGCgCAGgUCGAGCagcaauCGGCGGu- -3'
miRNA:   3'- -CUGCCG-GUCaAGCUCGcu----GCCGCUca -5'
22695 5' -58.5 NC_005091.1 + 32822 0.68 0.425625
Target:  5'- aGGCGGCCgaguagcAGUUCGAGUcgauGACGGCc--- -3'
miRNA:   3'- -CUGCCGG-------UCAAGCUCG----CUGCCGcuca -5'
22695 5' -58.5 NC_005091.1 + 42518 0.68 0.417319
Target:  5'- uGCGGuCCAGUUCGuucGUGACGaCGAGc -3'
miRNA:   3'- cUGCC-GGUCAAGCu--CGCUGCcGCUCa -5'
22695 5' -58.5 NC_005091.1 + 31327 0.69 0.399221
Target:  5'- cGCGGCCuugcacGUUCGGcGCGACgaacggGGCGAGc -3'
miRNA:   3'- cUGCCGGu-----CAAGCU-CGCUG------CCGCUCa -5'
22695 5' -58.5 NC_005091.1 + 57786 0.69 0.399221
Target:  5'- aGGCGGCCA-----AGCGGCGGgGAGa -3'
miRNA:   3'- -CUGCCGGUcaagcUCGCUGCCgCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.