miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22696 3' -58 NC_005091.1 + 9717 0.66 0.583628
Target:  5'- aGGCGa-UUCUGCGGGUucGCAauGCGCAu -3'
miRNA:   3'- -UCGUggAAGACGCCCG--CGUgcUGUGU- -5'
22696 3' -58 NC_005091.1 + 5088 0.66 0.572872
Target:  5'- uGGCugCccCUGCGGG-GCGUGACAUg -3'
miRNA:   3'- -UCGugGaaGACGCCCgCGUGCUGUGu -5'
22696 3' -58 NC_005091.1 + 51160 0.66 0.562164
Target:  5'- cGGUuuACCguuUCcGCGGGCGUugaucgaaGCGGCGCGc -3'
miRNA:   3'- -UCG--UGGa--AGaCGCCCGCG--------UGCUGUGU- -5'
22696 3' -58 NC_005091.1 + 34074 0.66 0.562164
Target:  5'- cGGCAgCUcggacUCgauaGCGGccGCGUACGACGCGu -3'
miRNA:   3'- -UCGUgGA-----AGa---CGCC--CGCGUGCUGUGU- -5'
22696 3' -58 NC_005091.1 + 810 0.66 0.55151
Target:  5'- uGCGCUgcgCUGCcgcguGGGUGUACGGCGg- -3'
miRNA:   3'- uCGUGGaa-GACG-----CCCGCGUGCUGUgu -5'
22696 3' -58 NC_005091.1 + 777 0.67 0.519949
Target:  5'- cGGaCAUCgaccaCUGCGGauuCGCGCGGCGCAg -3'
miRNA:   3'- -UC-GUGGaa---GACGCCc--GCGUGCUGUGU- -5'
22696 3' -58 NC_005091.1 + 55914 0.67 0.519949
Target:  5'- aGGCcgACCaaCUGCGuGCGCagGCGGCGCAg -3'
miRNA:   3'- -UCG--UGGaaGACGCcCGCG--UGCUGUGU- -5'
22696 3' -58 NC_005091.1 + 38792 0.67 0.509584
Target:  5'- aAGUACCggUUGCGGuaGUACGugAUg -3'
miRNA:   3'- -UCGUGGaaGACGCCcgCGUGCugUGu -5'
22696 3' -58 NC_005091.1 + 8725 0.68 0.459178
Target:  5'- cGCACCgagaaUGcCGGGUGCAUGAuCGCc -3'
miRNA:   3'- uCGUGGaag--AC-GCCCGCGUGCU-GUGu -5'
22696 3' -58 NC_005091.1 + 2600 0.68 0.439766
Target:  5'- cGCACUgguuggcuccggUUCUGCGGauGCGUucgauACGGCGCAg -3'
miRNA:   3'- uCGUGG------------AAGACGCC--CGCG-----UGCUGUGU- -5'
22696 3' -58 NC_005091.1 + 44572 0.68 0.430237
Target:  5'- gAGCGCCUUCU-CGGccGCGUcguACGugGCGu -3'
miRNA:   3'- -UCGUGGAAGAcGCC--CGCG---UGCugUGU- -5'
22696 3' -58 NC_005091.1 + 31744 0.69 0.402396
Target:  5'- -aCGCCUUCUGCGagccguccgaGGCGgccggguucCACGGCACGa -3'
miRNA:   3'- ucGUGGAAGACGC----------CCGC---------GUGCUGUGU- -5'
22696 3' -58 NC_005091.1 + 49033 0.69 0.402396
Target:  5'- cGUGCggugCUGCGGGCGCGCugcuGCGCAc -3'
miRNA:   3'- uCGUGgaa-GACGCCCGCGUGc---UGUGU- -5'
22696 3' -58 NC_005091.1 + 51679 0.69 0.384482
Target:  5'- cGCGCCcgugccgcgcUUCUGCGcGCccgucacgcgacGCACGACACAa -3'
miRNA:   3'- uCGUGG----------AAGACGCcCG------------CGUGCUGUGU- -5'
22696 3' -58 NC_005091.1 + 35233 0.69 0.367105
Target:  5'- cAGUACCUcgCgGCGGcGC-CGCGACGCGu -3'
miRNA:   3'- -UCGUGGAa-GaCGCC-CGcGUGCUGUGU- -5'
22696 3' -58 NC_005091.1 + 23227 0.7 0.350275
Target:  5'- cGUGCCg-CUGUGGuaGCGCGGCGCGu -3'
miRNA:   3'- uCGUGGaaGACGCCcgCGUGCUGUGU- -5'
22696 3' -58 NC_005091.1 + 44527 0.7 0.350275
Target:  5'- cGGCACUg---GCGGGUGCACcGGCAa- -3'
miRNA:   3'- -UCGUGGaagaCGCCCGCGUG-CUGUgu -5'
22696 3' -58 NC_005091.1 + 26079 0.7 0.349448
Target:  5'- gGGCgcgauuaACCUUgCgGCGGGCGCAcuCGAUGCAa -3'
miRNA:   3'- -UCG-------UGGAA-GaCGCCCGCGU--GCUGUGU- -5'
22696 3' -58 NC_005091.1 + 1124 0.7 0.334001
Target:  5'- cGCAUCUcCUGCGuGGCGUgaaGGCGCAu -3'
miRNA:   3'- uCGUGGAaGACGC-CCGCGug-CUGUGU- -5'
22696 3' -58 NC_005091.1 + 3033 0.7 0.334001
Target:  5'- cGGCGCUUUCaucguacgUGCGGGCaGCGCccaGCGCAu -3'
miRNA:   3'- -UCGUGGAAG--------ACGCCCG-CGUGc--UGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.