miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22696 5' -55.6 NC_005091.1 + 23067 0.66 0.659027
Target:  5'- aCCUGCGgcagaacgccguaacCGCAcGCCaAGCAuUGGGGa- -3'
miRNA:   3'- -GGACGC---------------GCGUaCGG-UCGUuACUCCaa -5'
22696 5' -55.6 NC_005091.1 + 14408 0.66 0.643428
Target:  5'- --cGCGUacuGCGUGCCuGCGGUGAGa-- -3'
miRNA:   3'- ggaCGCG---CGUACGGuCGUUACUCcaa -5'
22696 5' -55.6 NC_005091.1 + 48642 0.66 0.643428
Target:  5'- gCUgGCGCGCAgGCC--CGAUGAGGa- -3'
miRNA:   3'- gGA-CGCGCGUaCGGucGUUACUCCaa -5'
22696 5' -55.6 NC_005091.1 + 37873 0.66 0.632271
Target:  5'- gCUGCGCGCGUGCgggaAGCGccaAGGa- -3'
miRNA:   3'- gGACGCGCGUACGg---UCGUuacUCCaa -5'
22696 5' -55.6 NC_005091.1 + 26996 0.67 0.621114
Target:  5'- gCCUGCGcCGaCAUGUCcuuGGCGcggaugAUGAGGUc -3'
miRNA:   3'- -GGACGC-GC-GUACGG---UCGU------UACUCCAa -5'
22696 5' -55.6 NC_005091.1 + 18155 0.67 0.587741
Target:  5'- uCCUGCGCGCcgGCaagauucaGGCGGgucgcuacGAGGa- -3'
miRNA:   3'- -GGACGCGCGuaCGg-------UCGUUa-------CUCCaa -5'
22696 5' -55.6 NC_005091.1 + 48572 0.69 0.469914
Target:  5'- gCCUGCGCGCcaGCCAGUGAcacgGAGa-- -3'
miRNA:   3'- -GGACGCGCGuaCGGUCGUUa---CUCcaa -5'
22696 5' -55.6 NC_005091.1 + 21269 0.75 0.202524
Target:  5'- uCCUGCGCGCAuucaguuaUGUCAGUggUGAGcGa- -3'
miRNA:   3'- -GGACGCGCGU--------ACGGUCGuuACUC-Caa -5'
22696 5' -55.6 NC_005091.1 + 8013 0.77 0.162676
Target:  5'- aCgGCGCaGCAUGCCAGUAGUG-GGUUu -3'
miRNA:   3'- gGaCGCG-CGUACGGUCGUUACuCCAA- -5'
22696 5' -55.6 NC_005091.1 + 28717 1.07 0.001154
Target:  5'- gCCUGCGCGCAUGCCAGCAAUGAGGUUu -3'
miRNA:   3'- -GGACGCGCGUACGGUCGUUACUCCAA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.