Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22696 | 5' | -55.6 | NC_005091.1 | + | 23067 | 0.66 | 0.659027 |
Target: 5'- aCCUGCGgcagaacgccguaacCGCAcGCCaAGCAuUGGGGa- -3' miRNA: 3'- -GGACGC---------------GCGUaCGG-UCGUuACUCCaa -5' |
|||||||
22696 | 5' | -55.6 | NC_005091.1 | + | 14408 | 0.66 | 0.643428 |
Target: 5'- --cGCGUacuGCGUGCCuGCGGUGAGa-- -3' miRNA: 3'- ggaCGCG---CGUACGGuCGUUACUCcaa -5' |
|||||||
22696 | 5' | -55.6 | NC_005091.1 | + | 48642 | 0.66 | 0.643428 |
Target: 5'- gCUgGCGCGCAgGCC--CGAUGAGGa- -3' miRNA: 3'- gGA-CGCGCGUaCGGucGUUACUCCaa -5' |
|||||||
22696 | 5' | -55.6 | NC_005091.1 | + | 37873 | 0.66 | 0.632271 |
Target: 5'- gCUGCGCGCGUGCgggaAGCGccaAGGa- -3' miRNA: 3'- gGACGCGCGUACGg---UCGUuacUCCaa -5' |
|||||||
22696 | 5' | -55.6 | NC_005091.1 | + | 26996 | 0.67 | 0.621114 |
Target: 5'- gCCUGCGcCGaCAUGUCcuuGGCGcggaugAUGAGGUc -3' miRNA: 3'- -GGACGC-GC-GUACGG---UCGU------UACUCCAa -5' |
|||||||
22696 | 5' | -55.6 | NC_005091.1 | + | 18155 | 0.67 | 0.587741 |
Target: 5'- uCCUGCGCGCcgGCaagauucaGGCGGgucgcuacGAGGa- -3' miRNA: 3'- -GGACGCGCGuaCGg-------UCGUUa-------CUCCaa -5' |
|||||||
22696 | 5' | -55.6 | NC_005091.1 | + | 48572 | 0.69 | 0.469914 |
Target: 5'- gCCUGCGCGCcaGCCAGUGAcacgGAGa-- -3' miRNA: 3'- -GGACGCGCGuaCGGUCGUUa---CUCcaa -5' |
|||||||
22696 | 5' | -55.6 | NC_005091.1 | + | 21269 | 0.75 | 0.202524 |
Target: 5'- uCCUGCGCGCAuucaguuaUGUCAGUggUGAGcGa- -3' miRNA: 3'- -GGACGCGCGU--------ACGGUCGuuACUC-Caa -5' |
|||||||
22696 | 5' | -55.6 | NC_005091.1 | + | 8013 | 0.77 | 0.162676 |
Target: 5'- aCgGCGCaGCAUGCCAGUAGUG-GGUUu -3' miRNA: 3'- gGaCGCG-CGUACGGUCGUUACuCCAA- -5' |
|||||||
22696 | 5' | -55.6 | NC_005091.1 | + | 28717 | 1.07 | 0.001154 |
Target: 5'- gCCUGCGCGCAUGCCAGCAAUGAGGUUu -3' miRNA: 3'- -GGACGCGCGUACGGUCGUUACUCCAA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home