miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22699 3' -60.1 NC_005091.1 + 18888 0.66 0.492897
Target:  5'- gGCGU-GGAaGUUccGCGUGCGUCGAUCg -3'
miRNA:   3'- -UGCAuCCUgCGAc-CGCGCGCGGCUAG- -5'
22699 3' -60.1 NC_005091.1 + 14502 0.66 0.482976
Target:  5'- aACGUcGGuGCGCcGGUaaGCGUGCCGcUCg -3'
miRNA:   3'- -UGCAuCC-UGCGaCCG--CGCGCGGCuAG- -5'
22699 3' -60.1 NC_005091.1 + 27247 0.66 0.482976
Target:  5'- -----aGAgGCUGGCGuCGCGCCGcaGUCc -3'
miRNA:   3'- ugcaucCUgCGACCGC-GCGCGGC--UAG- -5'
22699 3' -60.1 NC_005091.1 + 6882 0.66 0.482976
Target:  5'- -aGUAGaGCGC-GaGCuGCGCGUCGGUCa -3'
miRNA:   3'- ugCAUCcUGCGaC-CG-CGCGCGGCUAG- -5'
22699 3' -60.1 NC_005091.1 + 19997 0.66 0.473152
Target:  5'- cCGUGGGcgGCGaUUGGUucgaGUGCGCCGAg- -3'
miRNA:   3'- uGCAUCC--UGC-GACCG----CGCGCGGCUag -5'
22699 3' -60.1 NC_005091.1 + 23416 0.66 0.444305
Target:  5'- gACGUGGGGCcUUGGCGCuuccGUGCCu--- -3'
miRNA:   3'- -UGCAUCCUGcGACCGCG----CGCGGcuag -5'
22699 3' -60.1 NC_005091.1 + 4306 0.66 0.444305
Target:  5'- gACGUAcGGcACGgugacgGGCGCGCcGCCGggCa -3'
miRNA:   3'- -UGCAU-CC-UGCga----CCGCGCG-CGGCuaG- -5'
22699 3' -60.1 NC_005091.1 + 40741 0.67 0.416473
Target:  5'- cCGUgaAGGGCGCU-GCGCGUaCCGAg- -3'
miRNA:   3'- uGCA--UCCUGCGAcCGCGCGcGGCUag -5'
22699 3' -60.1 NC_005091.1 + 49278 0.67 0.39852
Target:  5'- cACG-AGG-CGCaguucgucgGGCGUGCGCCGuacGUCg -3'
miRNA:   3'- -UGCaUCCuGCGa--------CCGCGCGCGGC---UAG- -5'
22699 3' -60.1 NC_005091.1 + 56686 0.67 0.39852
Target:  5'- gAUGUGGcauCGgaGGC-CGUGCCGGUCa -3'
miRNA:   3'- -UGCAUCcu-GCgaCCGcGCGCGGCUAG- -5'
22699 3' -60.1 NC_005091.1 + 33800 0.68 0.381071
Target:  5'- uCGaAGGGCGCaaGaagauGUGCGCCGAUCg -3'
miRNA:   3'- uGCaUCCUGCGacCg----CGCGCGGCUAG- -5'
22699 3' -60.1 NC_005091.1 + 36089 0.69 0.331868
Target:  5'- cGCGcAGGACuucGGCGCGCGCCu-UCa -3'
miRNA:   3'- -UGCaUCCUGcgaCCGCGCGCGGcuAG- -5'
22699 3' -60.1 NC_005091.1 + 36536 0.7 0.280571
Target:  5'- uGCGgc-GACGCUGuauCGUGCGCCGAUa -3'
miRNA:   3'- -UGCaucCUGCGACc--GCGCGCGGCUAg -5'
22699 3' -60.1 NC_005091.1 + 45791 0.7 0.273779
Target:  5'- -aGUAGccGGCGC-GGCGCGCGgCCGAc- -3'
miRNA:   3'- ugCAUC--CUGCGaCCGCGCGC-GGCUag -5'
22699 3' -60.1 NC_005091.1 + 10225 0.73 0.159854
Target:  5'- -aGUGcGGCGCUcGGCGCGUGCCGGc- -3'
miRNA:   3'- ugCAUcCUGCGA-CCGCGCGCGGCUag -5'
22699 3' -60.1 NC_005091.1 + 36181 0.75 0.132578
Target:  5'- ---cGGaGACGCgaaGGCGCGCGCCGAa- -3'
miRNA:   3'- ugcaUC-CUGCGa--CCGCGCGCGGCUag -5'
22699 3' -60.1 NC_005091.1 + 29492 1.09 0.000345
Target:  5'- gACGUAGGACGCUGGCGCGCGCCGAUCa -3'
miRNA:   3'- -UGCAUCCUGCGACCGCGCGCGGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.