miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2270 5' -52.1 NC_001405.1 + 3656 0.66 0.774663
Target:  5'- uUCCAucAAAcGAguuggcgcucauGGCgGCGGCUGCUGCa -3'
miRNA:   3'- -GGGU--UUUuCU------------UCGaCGUCGACGGCGg -5'
2270 5' -52.1 NC_001405.1 + 9935 0.66 0.774663
Target:  5'- gUCAAAAcGAAGcCUGgGGCaugGCCGaCCg -3'
miRNA:   3'- gGGUUUUuCUUC-GACgUCGa--CGGC-GG- -5'
2270 5' -52.1 NC_001405.1 + 17725 0.66 0.774663
Target:  5'- aCCGGGAaacGGAGGCgGCAGgUGaggGCCa -3'
miRNA:   3'- gGGUUUU---UCUUCGaCGUCgACgg-CGG- -5'
2270 5' -52.1 NC_001405.1 + 33188 0.66 0.76823
Target:  5'- aUCAGGAuaGGGcggugguGCUGCAGCagcgcgcgaauaaacUGCUGCCg -3'
miRNA:   3'- gGGUUUU--UCUu------CGACGUCG---------------ACGGCGG- -5'
2270 5' -52.1 NC_001405.1 + 6699 0.66 0.763909
Target:  5'- aCCCAuac--GAGC-GCGcGCuUGCCGCCc -3'
miRNA:   3'- -GGGUuuuucUUCGaCGU-CG-ACGGCGG- -5'
2270 5' -52.1 NC_001405.1 + 13751 0.66 0.746391
Target:  5'- -gCGAGGAGGAguaccuaaacaacucGCUGCuGCaGCCGCa -3'
miRNA:   3'- ggGUUUUUCUU---------------CGACGuCGaCGGCGg -5'
2270 5' -52.1 NC_001405.1 + 2466 0.66 0.741957
Target:  5'- uUCCAuAGAGcAGCUGaccacuuacuGGCUGCaGCCa -3'
miRNA:   3'- -GGGUuUUUCuUCGACg---------UCGACGgCGG- -5'
2270 5' -52.1 NC_001405.1 + 27229 0.66 0.741957
Target:  5'- gCCaCAAAuGGGAcUUGCGGCUggaGCUGCCc -3'
miRNA:   3'- -GG-GUUUuUCUUcGACGUCGA---CGGCGG- -5'
2270 5' -52.1 NC_001405.1 + 12139 0.66 0.741957
Target:  5'- cCCCAAGccGAcGCgcccuggagGCAGCUGggGCCg -3'
miRNA:   3'- -GGGUUUuuCUuCGa--------CGUCGACggCGG- -5'
2270 5' -52.1 NC_001405.1 + 11172 0.66 0.738618
Target:  5'- cCCCuccugacgcgguagGAGAAGggGagggugccCUGCAuGuCUGCCGCUg -3'
miRNA:   3'- -GGG--------------UUUUUCuuC--------GACGU-C-GACGGCGG- -5'
2270 5' -52.1 NC_001405.1 + 917 0.66 0.730786
Target:  5'- aCCCA---AGGcucucugcuccGGCUGCucgGGCUGCCGg- -3'
miRNA:   3'- -GGGUuuuUCU-----------UCGACG---UCGACGGCgg -5'
2270 5' -52.1 NC_001405.1 + 26248 0.66 0.730786
Target:  5'- uCCUggGAAGcaaGGGCccGCGGCUGCUGa- -3'
miRNA:   3'- -GGGuuUUUC---UUCGa-CGUCGACGGCgg -5'
2270 5' -52.1 NC_001405.1 + 14825 0.66 0.719504
Target:  5'- cCCCAGucuGAAGUUGCGGgUGUCa-- -3'
miRNA:   3'- -GGGUUuuuCUUCGACGUCgACGGcgg -5'
2270 5' -52.1 NC_001405.1 + 19230 0.67 0.708124
Target:  5'- aCCGAAGauAGcGGCcggGCAGUUGCCGa- -3'
miRNA:   3'- gGGUUUU--UCuUCGa--CGUCGACGGCgg -5'
2270 5' -52.1 NC_001405.1 + 5535 0.67 0.696661
Target:  5'- cUCCAAGGGcAAGCUGCGcGCcaaggGCCacGCCg -3'
miRNA:   3'- -GGGUUUUUcUUCGACGU-CGa----CGG--CGG- -5'
2270 5' -52.1 NC_001405.1 + 26498 0.67 0.692054
Target:  5'- gCCUGAGGagcGGAGGUUGUAGCgaugcugggaacgGuuGCCa -3'
miRNA:   3'- -GGGUUUU---UCUUCGACGUCGa------------CggCGG- -5'
2270 5' -52.1 NC_001405.1 + 26844 0.67 0.685126
Target:  5'- -gCAGGAGGAGgagcGCUGCGuCUGgCGCCc -3'
miRNA:   3'- ggGUUUUUCUU----CGACGUcGACgGCGG- -5'
2270 5' -52.1 NC_001405.1 + 7264 0.67 0.673534
Target:  5'- aCCCGuagaAAAGGGAuGCUGC-GCcuaccagGCCGUCa -3'
miRNA:   3'- -GGGU----UUUUCUU-CGACGuCGa------CGGCGG- -5'
2270 5' -52.1 NC_001405.1 + 11109 0.67 0.673534
Target:  5'- gCCGcugcugagGAGGGggGC-GCAuCUGCCGCa -3'
miRNA:   3'- gGGU--------UUUUCuuCGaCGUcGACGGCGg -5'
2270 5' -52.1 NC_001405.1 + 9546 0.67 0.673534
Target:  5'- uCCCGGuuauGGGuuGGCggGgGGCUGCCGUg -3'
miRNA:   3'- -GGGUUuu--UCU--UCGa-CgUCGACGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.