miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22701 3' -49.6 NC_005091.1 + 50977 0.67 0.955898
Target:  5'- uCGG-CAAGCGAUCGAUaGucguGCAUggCGGCg -3'
miRNA:   3'- -GCUgGUUUGCUAGCUA-Cu---UGUG--GCCG- -5'
22701 3' -49.6 NC_005091.1 + 25942 0.67 0.955898
Target:  5'- gCGGCCAGGCGAguacggauucguUCGAguUGAACuuCCGcauuGCa -3'
miRNA:   3'- -GCUGGUUUGCU------------AGCU--ACUUGu-GGC----CG- -5'
22701 3' -49.6 NC_005091.1 + 39021 0.67 0.953325
Target:  5'- --cCCAAACaGGUCGAUGAGCcauucaagcuguucCCGGUu -3'
miRNA:   3'- gcuGGUUUG-CUAGCUACUUGu-------------GGCCG- -5'
22701 3' -49.6 NC_005091.1 + 8632 0.67 0.951555
Target:  5'- gGAuUCAGGCGAUC-AUGcAC-CCGGCa -3'
miRNA:   3'- gCU-GGUUUGCUAGcUACuUGuGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 41326 0.67 0.942032
Target:  5'- uCGACCGGcacgccGCGAUCGuugAUGAGCugauCCaGCu -3'
miRNA:   3'- -GCUGGUU------UGCUAGC---UACUUGu---GGcCG- -5'
22701 3' -49.6 NC_005091.1 + 11672 0.67 0.955898
Target:  5'- cCGGCCuucAGCGGcUCGAUG-GCG-CGGCu -3'
miRNA:   3'- -GCUGGu--UUGCU-AGCUACuUGUgGCCG- -5'
22701 3' -49.6 NC_005091.1 + 40370 0.67 0.942032
Target:  5'- -uGCCGAGCGGUCGccGGAUguacuaccaucgACCGcGCa -3'
miRNA:   3'- gcUGGUUUGCUAGCuaCUUG------------UGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 18987 0.68 0.931372
Target:  5'- gCGACUGGccGCGAugcUCGGcgGAAUcguGCCGGCg -3'
miRNA:   3'- -GCUGGUU--UGCU---AGCUa-CUUG---UGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 44841 0.68 0.913222
Target:  5'- aCGACCAcGGCGGcCGGcaaGGGCGgCGGCa -3'
miRNA:   3'- -GCUGGU-UUGCUaGCUa--CUUGUgGCCG- -5'
22701 3' -49.6 NC_005091.1 + 11718 0.68 0.909282
Target:  5'- aCGGCau-GCGAUCGGgucucGAACAuuugggcgucuauccCCGGCa -3'
miRNA:   3'- -GCUGguuUGCUAGCUa----CUUGU---------------GGCCG- -5'
22701 3' -49.6 NC_005091.1 + 57108 0.68 0.906599
Target:  5'- gCGGCCGAGCGGcUGuauaucGAACGCCaGCu -3'
miRNA:   3'- -GCUGGUUUGCUaGCua----CUUGUGGcCG- -5'
22701 3' -49.6 NC_005091.1 + 6587 0.68 0.92561
Target:  5'- aGACaucGCGAagUCGAUGAucgcuCGCgCGGCg -3'
miRNA:   3'- gCUGguuUGCU--AGCUACUu----GUG-GCCG- -5'
22701 3' -49.6 NC_005091.1 + 31687 0.68 0.931372
Target:  5'- aGACCGGguGCGAUacCGuagccGCGCCGGCc -3'
miRNA:   3'- gCUGGUU--UGCUA--GCuacu-UGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 11757 0.68 0.91956
Target:  5'- -aGCCGcGCcAUCGAgccgcUGAAgGCCGGCg -3'
miRNA:   3'- gcUGGUuUGcUAGCU-----ACUUgUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 11255 0.68 0.912573
Target:  5'- -aACCAAA-GAUCGuaguUGAaaccaaguucaucGCACCGGCu -3'
miRNA:   3'- gcUGGUUUgCUAGCu---ACU-------------UGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 36764 0.68 0.922014
Target:  5'- gGACCAcGACGuucgguucguucgCGAUGA-CGCUGGCc -3'
miRNA:   3'- gCUGGU-UUGCua-----------GCUACUuGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 41418 0.68 0.925018
Target:  5'- gGAUCAgcucaucAACGAUCGcgGcgUGCCGGUc -3'
miRNA:   3'- gCUGGU-------UUGCUAGCuaCuuGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 50237 0.68 0.92561
Target:  5'- uCGGCCGcgUGAU-GAUGAAgGgCGGCc -3'
miRNA:   3'- -GCUGGUuuGCUAgCUACUUgUgGCCG- -5'
22701 3' -49.6 NC_005091.1 + 39386 0.68 0.913222
Target:  5'- uGGCCGAACGAgauucCGcucUGGcaGCACaCGGCg -3'
miRNA:   3'- gCUGGUUUGCUa----GCu--ACU--UGUG-GCCG- -5'
22701 3' -49.6 NC_005091.1 + 35352 0.69 0.899692
Target:  5'- aCGACCAGuCGAacuucUCGGUcagcagGAGCACCGauGCg -3'
miRNA:   3'- -GCUGGUUuGCU-----AGCUA------CUUGUGGC--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.