miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22701 3' -49.6 NC_005091.1 + 8116 0.7 0.825646
Target:  5'- gCGAcCCAGugGG-CGAagGAGC-CCGGCa -3'
miRNA:   3'- -GCU-GGUUugCUaGCUa-CUUGuGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 657 0.7 0.822846
Target:  5'- uCGACCGGGC-AUCGcgGAaaucuacgcggacuGCGCCGcGCg -3'
miRNA:   3'- -GCUGGUUUGcUAGCuaCU--------------UGUGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 30867 0.69 0.869315
Target:  5'- gCGACUGGACGA-CGGUu--CGCCGGUu -3'
miRNA:   3'- -GCUGGUUUGCUaGCUAcuuGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 20767 0.69 0.892505
Target:  5'- -uGCUAuaacauuGCGAUCcc-GAACACCGGCa -3'
miRNA:   3'- gcUGGUu------UGCUAGcuaCUUGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 50354 0.69 0.885043
Target:  5'- uGGCUgAGACGAUCGccGcAAUGCCGGUc -3'
miRNA:   3'- gCUGG-UUUGCUAGCuaC-UUGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 16005 0.69 0.877311
Target:  5'- aCGaACCAGACGGuuacggccgguaUCGcgGAcGCGCCGaGCg -3'
miRNA:   3'- -GC-UGGUUUGCU------------AGCuaCU-UGUGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 57325 0.69 0.869315
Target:  5'- -uGCgGGAUGAUCGGcuuguccgguUGGugGCCGGCc -3'
miRNA:   3'- gcUGgUUUGCUAGCU----------ACUugUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 1207 0.69 0.884282
Target:  5'- cCGGCCAuccCGAccaUGAUGAACauggacuuccucgGCCGGCu -3'
miRNA:   3'- -GCUGGUuu-GCUa--GCUACUUG-------------UGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 28236 0.69 0.885043
Target:  5'- cCGGCguGACGAU-GAUGGuuuccgguGCaACCGGCg -3'
miRNA:   3'- -GCUGguUUGCUAgCUACU--------UG-UGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 3486 0.69 0.898276
Target:  5'- uCGACCAGAUGGUCGucucgu-UCGGCu -3'
miRNA:   3'- -GCUGGUUUGCUAGCuacuuguGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 44646 0.69 0.869315
Target:  5'- gCGGCCGAgaagGCGcUCGAaGAagACGCgGGCg -3'
miRNA:   3'- -GCUGGUU----UGCuAGCUaCU--UGUGgCCG- -5'
22701 3' -49.6 NC_005091.1 + 27104 0.69 0.899692
Target:  5'- gGACCAGACGG-CGAaGAuuGCCGcGUa -3'
miRNA:   3'- gCUGGUUUGCUaGCUaCUugUGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 35352 0.69 0.899692
Target:  5'- aCGACCAGuCGAacuucUCGGUcagcagGAGCACCGauGCg -3'
miRNA:   3'- -GCUGGUUuGCU-----AGCUA------CUUGUGGC--CG- -5'
22701 3' -49.6 NC_005091.1 + 10113 0.69 0.892505
Target:  5'- gGACUAccucGCGcgCGAgacgGAcguuACGCCGGCa -3'
miRNA:   3'- gCUGGUu---UGCuaGCUa---CU----UGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 31687 0.68 0.931372
Target:  5'- aGACCGGguGCGAUacCGuagccGCGCCGGCc -3'
miRNA:   3'- gCUGGUU--UGCUA--GCuacu-UGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 11718 0.68 0.909282
Target:  5'- aCGGCau-GCGAUCGGgucucGAACAuuugggcgucuauccCCGGCa -3'
miRNA:   3'- -GCUGguuUGCUAGCUa----CUUGU---------------GGCCG- -5'
22701 3' -49.6 NC_005091.1 + 11255 0.68 0.912573
Target:  5'- -aACCAAA-GAUCGuaguUGAaaccaaguucaucGCACCGGCu -3'
miRNA:   3'- gcUGGUUUgCUAGCu---ACU-------------UGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 44841 0.68 0.913222
Target:  5'- aCGACCAcGGCGGcCGGcaaGGGCGgCGGCa -3'
miRNA:   3'- -GCUGGU-UUGCUaGCUa--CUUGUgGCCG- -5'
22701 3' -49.6 NC_005091.1 + 6587 0.68 0.92561
Target:  5'- aGACaucGCGAagUCGAUGAucgcuCGCgCGGCg -3'
miRNA:   3'- gCUGguuUGCU--AGCUACUu----GUG-GCCG- -5'
22701 3' -49.6 NC_005091.1 + 41418 0.68 0.925018
Target:  5'- gGAUCAgcucaucAACGAUCGcgGcgUGCCGGUc -3'
miRNA:   3'- gCUGGU-------UUGCUAGCuaCuuGUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.