Results 41 - 60 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 990 | 0.7 | 0.861063 |
Target: 5'- gCGugCGAGCaGGUCgcaauGAUGAucGCGCCGGg -3' miRNA: 3'- -GCugGUUUG-CUAG-----CUACU--UGUGGCCg -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 24175 | 0.7 | 0.861063 |
Target: 5'- aGACCGAACGAUCGcaaccGAaacuuGCGCagauGGCg -3' miRNA: 3'- gCUGGUUUGCUAGCua---CU-----UGUGg---CCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 30867 | 0.69 | 0.869315 |
Target: 5'- gCGACUGGACGA-CGGUu--CGCCGGUu -3' miRNA: 3'- -GCUGGUUUGCUaGCUAcuuGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 44646 | 0.69 | 0.869315 |
Target: 5'- gCGGCCGAgaagGCGcUCGAaGAagACGCgGGCg -3' miRNA: 3'- -GCUGGUU----UGCuAGCUaCU--UGUGgCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 57325 | 0.69 | 0.869315 |
Target: 5'- -uGCgGGAUGAUCGGcuuguccgguUGGugGCCGGCc -3' miRNA: 3'- gcUGgUUUGCUAGCU----------ACUugUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 16005 | 0.69 | 0.877311 |
Target: 5'- aCGaACCAGACGGuuacggccgguaUCGcgGAcGCGCCGaGCg -3' miRNA: 3'- -GC-UGGUUUGCU------------AGCuaCU-UGUGGC-CG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 1207 | 0.69 | 0.884282 |
Target: 5'- cCGGCCAuccCGAccaUGAUGAACauggacuuccucgGCCGGCu -3' miRNA: 3'- -GCUGGUuu-GCUa--GCUACUUG-------------UGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 28236 | 0.69 | 0.885043 |
Target: 5'- cCGGCguGACGAU-GAUGGuuuccgguGCaACCGGCg -3' miRNA: 3'- -GCUGguUUGCUAgCUACU--------UG-UGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 50354 | 0.69 | 0.885043 |
Target: 5'- uGGCUgAGACGAUCGccGcAAUGCCGGUc -3' miRNA: 3'- gCUGG-UUUGCUAGCuaC-UUGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 10113 | 0.69 | 0.892505 |
Target: 5'- gGACUAccucGCGcgCGAgacgGAcguuACGCCGGCa -3' miRNA: 3'- gCUGGUu---UGCuaGCUa---CU----UGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 20767 | 0.69 | 0.892505 |
Target: 5'- -uGCUAuaacauuGCGAUCcc-GAACACCGGCa -3' miRNA: 3'- gcUGGUu------UGCUAGcuaCUUGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 3486 | 0.69 | 0.898276 |
Target: 5'- uCGACCAGAUGGUCGucucgu-UCGGCu -3' miRNA: 3'- -GCUGGUUUGCUAGCuacuuguGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 35352 | 0.69 | 0.899692 |
Target: 5'- aCGACCAGuCGAacuucUCGGUcagcagGAGCACCGauGCg -3' miRNA: 3'- -GCUGGUUuGCU-----AGCUA------CUUGUGGC--CG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 27104 | 0.69 | 0.899692 |
Target: 5'- gGACCAGACGG-CGAaGAuuGCCGcGUa -3' miRNA: 3'- gCUGGUUUGCUaGCUaCUugUGGC-CG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 57108 | 0.68 | 0.906599 |
Target: 5'- gCGGCCGAGCGGcUGuauaucGAACGCCaGCu -3' miRNA: 3'- -GCUGGUUUGCUaGCua----CUUGUGGcCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 11718 | 0.68 | 0.909282 |
Target: 5'- aCGGCau-GCGAUCGGgucucGAACAuuugggcgucuauccCCGGCa -3' miRNA: 3'- -GCUGguuUGCUAGCUa----CUUGU---------------GGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 11255 | 0.68 | 0.912573 |
Target: 5'- -aACCAAA-GAUCGuaguUGAaaccaaguucaucGCACCGGCu -3' miRNA: 3'- gcUGGUUUgCUAGCu---ACU-------------UGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 44841 | 0.68 | 0.913222 |
Target: 5'- aCGACCAcGGCGGcCGGcaaGGGCGgCGGCa -3' miRNA: 3'- -GCUGGU-UUGCUaGCUa--CUUGUgGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 39386 | 0.68 | 0.913222 |
Target: 5'- uGGCCGAACGAgauucCGcucUGGcaGCACaCGGCg -3' miRNA: 3'- gCUGGUUUGCUa----GCu--ACU--UGUG-GCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 11757 | 0.68 | 0.91956 |
Target: 5'- -aGCCGcGCcAUCGAgccgcUGAAgGCCGGCg -3' miRNA: 3'- gcUGGUuUGcUAGCU-----ACUUgUGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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