Results 61 - 80 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 36764 | 0.68 | 0.922014 |
Target: 5'- gGACCAcGACGuucgguucguucgCGAUGA-CGCUGGCc -3' miRNA: 3'- gCUGGU-UUGCua-----------GCUACUuGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 41418 | 0.68 | 0.925018 |
Target: 5'- gGAUCAgcucaucAACGAUCGcgGcgUGCCGGUc -3' miRNA: 3'- gCUGGU-------UUGCUAGCuaCuuGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 6587 | 0.68 | 0.92561 |
Target: 5'- aGACaucGCGAagUCGAUGAucgcuCGCgCGGCg -3' miRNA: 3'- gCUGguuUGCU--AGCUACUu----GUG-GCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 50237 | 0.68 | 0.92561 |
Target: 5'- uCGGCCGcgUGAU-GAUGAAgGgCGGCc -3' miRNA: 3'- -GCUGGUuuGCUAgCUACUUgUgGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 18987 | 0.68 | 0.931372 |
Target: 5'- gCGACUGGccGCGAugcUCGGcgGAAUcguGCCGGCg -3' miRNA: 3'- -GCUGGUU--UGCU---AGCUa-CUUG---UGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 31687 | 0.68 | 0.931372 |
Target: 5'- aGACCGGguGCGAUacCGuagccGCGCCGGCc -3' miRNA: 3'- gCUGGUU--UGCUA--GCuacu-UGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 13600 | 0.67 | 0.936845 |
Target: 5'- gCGACCcGGCG-UCGAgcagcgacgUGAACGgucUCGGCg -3' miRNA: 3'- -GCUGGuUUGCuAGCU---------ACUUGU---GGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 55058 | 0.67 | 0.942032 |
Target: 5'- cCGGCCGGACGAggggCGcagaaaacgGGACAgCCGcGCg -3' miRNA: 3'- -GCUGGUUUGCUa---GCua-------CUUGU-GGC-CG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 40370 | 0.67 | 0.942032 |
Target: 5'- -uGCCGAGCGGUCGccGGAUguacuaccaucgACCGcGCa -3' miRNA: 3'- gcUGGUUUGCUAGCuaCUUG------------UGGC-CG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 41326 | 0.67 | 0.942032 |
Target: 5'- uCGACCGGcacgccGCGAUCGuugAUGAGCugauCCaGCu -3' miRNA: 3'- -GCUGGUU------UGCUAGC---UACUUGu---GGcCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 22064 | 0.67 | 0.942032 |
Target: 5'- uCGACCc-GCG-UCGGUcGACaguGCCGGCa -3' miRNA: 3'- -GCUGGuuUGCuAGCUAcUUG---UGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 55111 | 0.67 | 0.945493 |
Target: 5'- aGGCCcccaaaguaagcacGAGgGGUCGucagcacgGGAUACCGGCg -3' miRNA: 3'- gCUGG--------------UUUgCUAGCua------CUUGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 22845 | 0.67 | 0.946934 |
Target: 5'- -uGCCGAGCGcacgCGccUGAACGCCGcGCu -3' miRNA: 3'- gcUGGUUUGCua--GCu-ACUUGUGGC-CG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 14017 | 0.67 | 0.946934 |
Target: 5'- cCGcACCGaaGugGAUCGAcucgucGCGCCGGUa -3' miRNA: 3'- -GC-UGGU--UugCUAGCUacu---UGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 49273 | 0.67 | 0.951555 |
Target: 5'- -aGCCGcACGucauccgcAUCGGUGggUACUGGUa -3' miRNA: 3'- gcUGGUuUGC--------UAGCUACuuGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 8632 | 0.67 | 0.951555 |
Target: 5'- gGAuUCAGGCGAUC-AUGcAC-CCGGCa -3' miRNA: 3'- gCU-GGUUUGCUAGcUACuUGuGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 39021 | 0.67 | 0.953325 |
Target: 5'- --cCCAAACaGGUCGAUGAGCcauucaagcuguucCCGGUu -3' miRNA: 3'- gcuGGUUUG-CUAGCUACUUGu-------------GGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 48601 | 0.67 | 0.955898 |
Target: 5'- aCGAUCAAACGaAUCGucuaGugACgCGGCg -3' miRNA: 3'- -GCUGGUUUGC-UAGCuac-UugUG-GCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 50977 | 0.67 | 0.955898 |
Target: 5'- uCGG-CAAGCGAUCGAUaGucguGCAUggCGGCg -3' miRNA: 3'- -GCUgGUUUGCUAGCUA-Cu---UGUG--GCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 25942 | 0.67 | 0.955898 |
Target: 5'- gCGGCCAGGCGAguacggauucguUCGAguUGAACuuCCGcauuGCa -3' miRNA: 3'- -GCUGGUUUGCU------------AGCU--ACUUGu-GGC----CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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