miRNA display CGI


Results 81 - 100 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22701 3' -49.6 NC_005091.1 + 11672 0.67 0.955898
Target:  5'- cCGGCCuucAGCGGcUCGAUG-GCG-CGGCu -3'
miRNA:   3'- -GCUGGu--UUGCU-AGCUACuUGUgGCCG- -5'
22701 3' -49.6 NC_005091.1 + 48601 0.67 0.955898
Target:  5'- aCGAUCAAACGaAUCGucuaGugACgCGGCg -3'
miRNA:   3'- -GCUGGUUUGC-UAGCuac-UugUG-GCCG- -5'
22701 3' -49.6 NC_005091.1 + 56772 0.67 0.955898
Target:  5'- gCGAgCAucuCGGUCGGUuGAuCGCgGGCa -3'
miRNA:   3'- -GCUgGUuu-GCUAGCUA-CUuGUGgCCG- -5'
22701 3' -49.6 NC_005091.1 + 25942 0.67 0.955898
Target:  5'- gCGGCCAGGCGAguacggauucguUCGAguUGAACuuCCGcauuGCa -3'
miRNA:   3'- -GCUGGUUUGCU------------AGCU--ACUUGu-GGC----CG- -5'
22701 3' -49.6 NC_005091.1 + 5324 0.66 0.959968
Target:  5'- uCGGCCGAACGccugaaCGAauUGAacgccucgaaGCACCGGa -3'
miRNA:   3'- -GCUGGUUUGCua----GCU--ACU----------UGUGGCCg -5'
22701 3' -49.6 NC_005091.1 + 31678 0.66 0.959968
Target:  5'- -cGCCAAGCagccuUCGcgGGcACGCCGGUg -3'
miRNA:   3'- gcUGGUUUGcu---AGCuaCU-UGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 16607 0.66 0.959968
Target:  5'- gCGACCGGcuCGGguaucccCGA--AGCGCCGGCa -3'
miRNA:   3'- -GCUGGUUu-GCUa------GCUacUUGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 38515 0.66 0.959968
Target:  5'- aGACCuGACGcaacuuGUCGAaGAGCugaaCGGCg -3'
miRNA:   3'- gCUGGuUUGC------UAGCUaCUUGug--GCCG- -5'
22701 3' -49.6 NC_005091.1 + 7753 0.66 0.959968
Target:  5'- aGuACCAGuacaaGAUCGA-GAACAUCGaGCg -3'
miRNA:   3'- gC-UGGUUug---CUAGCUaCUUGUGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 8930 0.66 0.963403
Target:  5'- gCGGCCGagcaccugaaaaaGACGcUCGAaGAACGCaaaCGGCc -3'
miRNA:   3'- -GCUGGU-------------UUGCuAGCUaCUUGUG---GCCG- -5'
22701 3' -49.6 NC_005091.1 + 9212 0.66 0.963772
Target:  5'- gCGAcCCGAAuCGcgCGGUGuuu-CCGGCg -3'
miRNA:   3'- -GCU-GGUUU-GCuaGCUACuuguGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 45979 0.66 0.963772
Target:  5'- aGGCCAAGCu-UCGAggcUGGACGCUGa- -3'
miRNA:   3'- gCUGGUUUGcuAGCU---ACUUGUGGCcg -5'
22701 3' -49.6 NC_005091.1 + 39434 0.66 0.963772
Target:  5'- -uGCCAa--GGUCGAUGAACAgUGcGCu -3'
miRNA:   3'- gcUGGUuugCUAGCUACUUGUgGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 28096 0.66 0.963772
Target:  5'- gCGGCCGuucuucaGGUCGAuguugaaguucgUGAGCgggauuucgGCCGGCg -3'
miRNA:   3'- -GCUGGUuug----CUAGCU------------ACUUG---------UGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 25720 0.66 0.963772
Target:  5'- gCGGCCAGcucgGCGAUCGGcUGccCGCC-GCa -3'
miRNA:   3'- -GCUGGUU----UGCUAGCU-ACuuGUGGcCG- -5'
22701 3' -49.6 NC_005091.1 + 36815 0.66 0.963772
Target:  5'- -uGCCGGACGA-CGuUGAugGCgaCGGCg -3'
miRNA:   3'- gcUGGUUUGCUaGCuACUugUG--GCCG- -5'
22701 3' -49.6 NC_005091.1 + 53599 0.66 0.967316
Target:  5'- -uACUGGAUGGUucgcCGAUGAACA-CGGCg -3'
miRNA:   3'- gcUGGUUUGCUA----GCUACUUGUgGCCG- -5'
22701 3' -49.6 NC_005091.1 + 51056 0.66 0.968662
Target:  5'- aCGACUAu-CGAUCGcuugccgauuugcccGUGcGCACCGcGCu -3'
miRNA:   3'- -GCUGGUuuGCUAGC---------------UACuUGUGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 37226 0.66 0.969968
Target:  5'- gCGGCCGGAagaugucggcgaGGUCGAUGAccaucGCcCCGaGCg -3'
miRNA:   3'- -GCUGGUUUg-----------CUAGCUACU-----UGuGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 10250 0.66 0.970607
Target:  5'- gGGCCGAucucauCGAacUGAUGGAgGCCGGa -3'
miRNA:   3'- gCUGGUUu-----GCUa-GCUACUUgUGGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.