miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22701 3' -49.6 NC_005091.1 + 16005 0.69 0.877311
Target:  5'- aCGaACCAGACGGuuacggccgguaUCGcgGAcGCGCCGaGCg -3'
miRNA:   3'- -GC-UGGUUUGCU------------AGCuaCU-UGUGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 16363 0.71 0.786844
Target:  5'- gCGGCCAAGCGA-CGugGAACGugcUCGGCg -3'
miRNA:   3'- -GCUGGUUUGCUaGCuaCUUGU---GGCCG- -5'
22701 3' -49.6 NC_005091.1 + 16607 0.66 0.959968
Target:  5'- gCGACCGGcuCGGguaucccCGA--AGCGCCGGCa -3'
miRNA:   3'- -GCUGGUUu-GCUa------GCUacUUGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 18160 0.72 0.741094
Target:  5'- gCGGCCcGGCGAUCGAgcgUGAGCGugaaccgcuucaaCGGCg -3'
miRNA:   3'- -GCUGGuUUGCUAGCU---ACUUGUg------------GCCG- -5'
22701 3' -49.6 NC_005091.1 + 18427 0.66 0.973653
Target:  5'- aGGCCGGACGuguaGUCGAaaugcgGAAuuguCGCCGGg -3'
miRNA:   3'- gCUGGUUUGC----UAGCUa-----CUU----GUGGCCg -5'
22701 3' -49.6 NC_005091.1 + 18799 0.76 0.54581
Target:  5'- aGACCAucaaGG-CGAUGAAC-CCGGCg -3'
miRNA:   3'- gCUGGUuug-CUaGCUACUUGuGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 18987 0.68 0.931372
Target:  5'- gCGACUGGccGCGAugcUCGGcgGAAUcguGCCGGCg -3'
miRNA:   3'- -GCUGGUU--UGCU---AGCUa-CUUG---UGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 20767 0.69 0.892505
Target:  5'- -uGCUAuaacauuGCGAUCcc-GAACACCGGCa -3'
miRNA:   3'- gcUGGUu------UGCUAGcuaCUUGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 22007 0.7 0.825646
Target:  5'- uCGACCAGACuacgggcaacgaGAUCGuuaccGUGGACG-CGGCg -3'
miRNA:   3'- -GCUGGUUUG------------CUAGC-----UACUUGUgGCCG- -5'
22701 3' -49.6 NC_005091.1 + 22064 0.67 0.942032
Target:  5'- uCGACCc-GCG-UCGGUcGACaguGCCGGCa -3'
miRNA:   3'- -GCUGGuuUGCuAGCUAcUUG---UGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 22845 0.67 0.946934
Target:  5'- -uGCCGAGCGcacgCGccUGAACGCCGcGCu -3'
miRNA:   3'- gcUGGUUUGCua--GCu-ACUUGUGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 22914 0.7 0.861063
Target:  5'- gGACCAuuCGGUCGcgGAAgACCa-- -3'
miRNA:   3'- gCUGGUuuGCUAGCuaCUUgUGGccg -5'
22701 3' -49.6 NC_005091.1 + 24175 0.7 0.861063
Target:  5'- aGACCGAACGAUCGcaaccGAaacuuGCGCagauGGCg -3'
miRNA:   3'- gCUGGUUUGCUAGCua---CU-----UGUGg---CCG- -5'
22701 3' -49.6 NC_005091.1 + 25093 0.75 0.567846
Target:  5'- gCGGCCAcggaGGCGGUCGccaucGAcGCGCCGGCu -3'
miRNA:   3'- -GCUGGU----UUGCUAGCua---CU-UGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 25157 0.77 0.471267
Target:  5'- uGGCCGc-CGAUCGGuUGAACGCCGcGCu -3'
miRNA:   3'- gCUGGUuuGCUAGCU-ACUUGUGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 25211 0.7 0.843818
Target:  5'- gCGGCCGcugcaccGgGGUCGAUGca-GCCGGCg -3'
miRNA:   3'- -GCUGGUu------UgCUAGCUACuugUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 25636 0.66 0.970607
Target:  5'- gCGGgCAGcCGAUCGccGAGCugGCCGcGCa -3'
miRNA:   3'- -GCUgGUUuGCUAGCuaCUUG--UGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 25720 0.66 0.963772
Target:  5'- gCGGCCAGcucgGCGAUCGGcUGccCGCC-GCa -3'
miRNA:   3'- -GCUGGUU----UGCUAGCU-ACuuGUGGcCG- -5'
22701 3' -49.6 NC_005091.1 + 25942 0.67 0.955898
Target:  5'- gCGGCCAGGCGAguacggauucguUCGAguUGAACuuCCGcauuGCa -3'
miRNA:   3'- -GCUGGUUUGCU------------AGCU--ACUUGu-GGC----CG- -5'
22701 3' -49.6 NC_005091.1 + 25957 0.66 0.973653
Target:  5'- aCGugCAGGCGcaaGccGAACGCCucGGCa -3'
miRNA:   3'- -GCugGUUUGCuagCuaCUUGUGG--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.