Results 61 - 80 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 26634 | 0.66 | 0.970607 |
Target: 5'- uCGAguucaCGGGCGGUCGAUcGAGuCGgCGGCc -3' miRNA: 3'- -GCUg----GUUUGCUAGCUA-CUU-GUgGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 27104 | 0.69 | 0.899692 |
Target: 5'- gGACCAGACGG-CGAaGAuuGCCGcGUa -3' miRNA: 3'- gCUGGUUUGCUaGCUaCUugUGGC-CG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 27731 | 0.66 | 0.970607 |
Target: 5'- cCGACCGG--GAUCG-UGGuGCGCCGuGCu -3' miRNA: 3'- -GCUGGUUugCUAGCuACU-UGUGGC-CG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 28096 | 0.66 | 0.963772 |
Target: 5'- gCGGCCGuucuucaGGUCGAuguugaaguucgUGAGCgggauuucgGCCGGCg -3' miRNA: 3'- -GCUGGUuug----CUAGCU------------ACUUG---------UGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 28236 | 0.69 | 0.885043 |
Target: 5'- cCGGCguGACGAU-GAUGGuuuccgguGCaACCGGCg -3' miRNA: 3'- -GCUGguUUGCUAgCUACU--------UG-UGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 29477 | 0.75 | 0.57895 |
Target: 5'- gCGaACCGGGCGAgCGAcguaGGACGCUGGCg -3' miRNA: 3'- -GC-UGGUUUGCUaGCUa---CUUGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 30867 | 0.69 | 0.869315 |
Target: 5'- gCGACUGGACGA-CGGUu--CGCCGGUu -3' miRNA: 3'- -GCUGGUUUGCUaGCUAcuuGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 31204 | 0.72 | 0.745361 |
Target: 5'- -uGCCGccGAUGAUCGGcUGcuCGCCGGCa -3' miRNA: 3'- gcUGGU--UUGCUAGCU-ACuuGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 31521 | 0.71 | 0.786844 |
Target: 5'- cCGGCCcGGCGcuGUCGAUG--UACUGGCa -3' miRNA: 3'- -GCUGGuUUGC--UAGCUACuuGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 31572 | 1.14 | 0.002448 |
Target: 5'- uCGACCAAACGAUCGAUGAACACCGGCg -3' miRNA: 3'- -GCUGGUUUGCUAGCUACUUGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 31678 | 0.66 | 0.959968 |
Target: 5'- -cGCCAAGCagccuUCGcgGGcACGCCGGUg -3' miRNA: 3'- gcUGGUUUGcu---AGCuaCU-UGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 31687 | 0.68 | 0.931372 |
Target: 5'- aGACCGGguGCGAUacCGuagccGCGCCGGCc -3' miRNA: 3'- gCUGGUU--UGCUA--GCuacu-UGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 32010 | 0.72 | 0.745361 |
Target: 5'- aGAagaAAAUGAUCGAucgUGAucuCGCCGGCa -3' miRNA: 3'- gCUgg-UUUGCUAGCU---ACUu--GUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 32250 | 0.66 | 0.970607 |
Target: 5'- cCGAuCCGGcCGAUaCGAgcaaGAACGCCacGGCg -3' miRNA: 3'- -GCU-GGUUuGCUA-GCUa---CUUGUGG--CCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 33309 | 0.7 | 0.825646 |
Target: 5'- gCGGgCAGAUGGUCGccGcgcauuACGCCGGCc -3' miRNA: 3'- -GCUgGUUUGCUAGCuaCu-----UGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 34770 | 0.7 | 0.84115 |
Target: 5'- cCGGCCGcgcgcgucGGCGAUCcgcuucagcggguuGAUGAggGCAuCCGGCg -3' miRNA: 3'- -GCUGGU--------UUGCUAG--------------CUACU--UGU-GGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 35352 | 0.69 | 0.899692 |
Target: 5'- aCGACCAGuCGAacuucUCGGUcagcagGAGCACCGauGCg -3' miRNA: 3'- -GCUGGUUuGCU-----AGCUA------CUUGUGGC--CG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 36764 | 0.68 | 0.922014 |
Target: 5'- gGACCAcGACGuucgguucguucgCGAUGA-CGCUGGCc -3' miRNA: 3'- gCUGGU-UUGCua-----------GCUACUuGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 36815 | 0.66 | 0.963772 |
Target: 5'- -uGCCGGACGA-CGuUGAugGCgaCGGCg -3' miRNA: 3'- gcUGGUUUGCUaGCuACUugUG--GCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 37226 | 0.66 | 0.969968 |
Target: 5'- gCGGCCGGAagaugucggcgaGGUCGAUGAccaucGCcCCGaGCg -3' miRNA: 3'- -GCUGGUUUg-----------CUAGCUACU-----UGuGGC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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